Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
USP39Q53GS9 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
USP39Q53GS9 MIR369-201ENST00000362155 70 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AL359837.1-201ENST00000381357 287 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 RNU6-730P-201ENST00000383954 104 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 SNORA32.2-201ENST00000384049 122 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 SNORD96B-201ENST00000386148 79 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AL022722.2-201ENST00000402519 180 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 BTBD10P2-201ENST00000404779 676 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 NCOR1P3-201ENST00000420479 303 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.53□□□□□ -1.68
USP39Q53GS9 RPL30P3-201ENST00000424262 333 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AL353777.1-201ENST00000425552 326 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AC108059.2-201ENST00000434626 151 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 GTF2IP13-201ENST00000438487 386 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 HSFY6P-201ENST00000445573 403 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 ISCUP1-201ENST00000454451 448 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.53□□□□□ -1.68
USP39Q53GS9 RPS15AP17-201ENST00000470598 390 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 RPL31P50-201ENST00000471002 296 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 TMEM251P1-201ENST00000503717 318 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AC021146.2-201ENST00000504736 556 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.53□□□□□ -1.68
USP39Q53GS9 AP003072.2-201ENST00000527756 676 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC4.53□□□□□ -1.68
USP39Q53GS9 OR8R1P-201ENST00000543943 764 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC4.53□□□□□ -1.68
USP39Q53GS9 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.53□□□□□ -1.68
USP39Q53GS9 AC034105.4-201ENST00000568304 277 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AC099489.2-201ENST00000574976 260 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AL157938.2-203ENST00000589540 931 ntTSL 5 BASIC4.53□□□□□ -1.68
USP39Q53GS9 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.53□□□□□ -1.68
USP39Q53GS9 BX664608.1-201ENST00000610519 487 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AC104237.2-201ENST00000612456 443 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AC078899.5-201ENST00000612475 178 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AC005086.4-201ENST00000623065 213 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.53□□□□□ -1.68
USP39Q53GS9 MIR492-201ENST00000638676 116 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 OR2L1P-202ENST00000641567 1023 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 AP002907.1-201ENST00000606361 1430 ntBASIC4.53□□□□□ -1.68
USP39Q53GS9 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.53□□□□□ -1.69
USP39Q53GS9 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.52□□□□□ -1.69
USP39Q53GS9 USP9YP4-201ENST00000424401 1745 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP39Q53GS9 RIOK3P1-201ENST00000418778 1528 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC4.52□□□□□ -1.69
USP39Q53GS9 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.52□□□□□ -1.69
USP39Q53GS9 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.52□□□□□ -1.69
USP39Q53GS9 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP39Q53GS9 Y_RNA.133-201ENST00000363428 110 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 RNU6-169P-201ENST00000365336 107 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
USP39Q53GS9 Y_RNA.384-201ENST00000383909 102 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 Y_RNA.387-201ENST00000383918 102 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 RNU6-317P-201ENST00000384031 107 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 MIR708-201ENST00000390708 88 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
USP39Q53GS9 DHFRP6-201ENST00000401776 268 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AL136116.1-201ENST00000403591 381 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC078974.1-201ENST00000411597 223 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 RPL36AP36-201ENST00000418616 301 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AL645937.1-202ENST00000421799 937 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC018630.2-202ENST00000422992 927 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC019097.1-201ENST00000424783 735 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC4.52□□□□□ -1.69
USP39Q53GS9 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.52□□□□□ -1.69
USP39Q53GS9 Z82205.1-201ENST00000428456 297 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 OR4C10P-201ENST00000434991 931 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 TRAPPC2P8-201ENST00000440676 396 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 BNIP3P2-201ENST00000441221 577 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC006480.1-201ENST00000449887 378 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 RPS15AP1-201ENST00000457423 391 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 RNU6-329P-201ENST00000459618 107 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC053481.1-201ENST00000467217 306 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC233702.1-201ENST00000482905 502 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 Y_RNA.711-201ENST00000516993 102 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 RNU6-1220P-201ENST00000517126 108 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 RNU6-1314P-201ENST00000517139 104 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 IGKV2-36-201ENST00000519999 223 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 SUB1P1-201ENST00000524415 382 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC4.52□□□□□ -1.69
USP39Q53GS9 AC123904.2-201ENST00000548059 300 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 MIR3118-1-201ENST00000581787 76 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 RNA5SP196-201ENST00000625967 102 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.52□□□□□ -1.69
USP39Q53GS9 ANKRD62P1-201ENST00000434304 1623 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AL391684.1-202ENST00000641293 1636 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.52□□□□□ -1.69
USP39Q53GS9 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC4.52□□□□□ -1.69
USP39Q53GS9 SAGE2P-201ENST00000420011 2126 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
USP39Q53GS9 AC097504.1-201ENST00000515103 2415 ntBASIC4.52□□□□□ -1.69
USP39Q53GS9 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.52□□□□□ -1.69
USP39Q53GS9 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
USP39Q53GS9 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
USP39Q53GS9 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms