Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 AC114491.1-201ENST00000416095 246 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AL391219.1-201ENST00000422570 483 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 RPL21P91-201ENST00000429231 479 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 MRPL48P1-201ENST00000445390 636 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 MRPL50P4-201ENST00000446432 475 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 RNU7-182P-201ENST00000459009 62 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA4Q00056 RPS15AP36-201ENST00000492022 382 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 IGKV1OR2-1-201ENST00000514060 354 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 RN7SKP116-201ENST00000516902 319 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AC105029.1-201ENST00000520250 669 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC3.78□□□□□ -1.8
HOXA4Q00056 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC3.78□□□□□ -1.8
HOXA4Q00056 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 AL161713.1-201ENST00000555538 145 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 AC006272.2-201ENST00000594725 163 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 RNF138P2-201ENST00000603490 592 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AL031176.1-201ENST00000604554 466 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AL442067.2-201ENST00000614033 363 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AL161637.1-201ENST00000622380 412 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.78□□□□□ -1.8
HOXA4Q00056 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 AC090971.4-201ENST00000560291 1800 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 AC244517.1-201ENST00000606030 2086 ntBASIC3.78□□□□□ -1.8
HOXA4Q00056 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC3.78□□□□□ -1.8
HOXA4Q00056 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXA4Q00056 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC3.78□□□□□ -1.8
HOXA4Q00056 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
HOXA4Q00056 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
HOXA4Q00056 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.81
HOXA4Q00056 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.81
HOXA4Q00056 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
HOXA4Q00056 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA4Q00056 ZFRP1-201ENST00000457579 2970 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AC004972.1-201ENST00000623934 2209 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 RNU4-79P-201ENST00000362764 141 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RNU6-188P-201ENST00000364207 107 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RNU5E-6P-201ENST00000365574 115 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RNU6-116P-201ENST00000384042 109 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RNU6-637P-201ENST00000384050 107 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 SNORA70E-201ENST00000384492 135 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RNU6-754P-201ENST00000391166 107 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AL136372.1-201ENST00000403060 228 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RN7SKP32-201ENST00000410167 303 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RPS20P14-201ENST00000412545 360 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA4Q00056 MTCO3P46-201ENST00000425787 232 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RPS27AP12-201ENST00000429552 465 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC005094.1-201ENST00000440420 368 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AL118520.1-201ENST00000450770 291 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC005008.1-201ENST00000456151 612 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA4Q00056 HMGN2P26-201ENST00000463169 339 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA4Q00056 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
HOXA4Q00056 AC103851.1-201ENST00000506833 274 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA4Q00056 TTC39CP1-201ENST00000512513 755 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 Y_RNA.701-201ENST00000516812 110 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA4Q00056 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA4Q00056 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AL390726.5-202ENST00000564800 256 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXA4Q00056 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.77□□□□□ -1.81
HOXA4Q00056 AC243960.4-201ENST00000600532 288 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC012669.1-201ENST00000603209 283 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 RNU6-89P-201ENST00000606519 100 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AC093838.1-201ENST00000613014 469 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 MIR6891-201ENST00000618788 93 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 AL359313.1-202ENST00000635073 544 ntTSL 4 BASIC3.77□□□□□ -1.81
HOXA4Q00056 MTND1P37-201ENST00000636562 264 ntBASIC3.77□□□□□ -1.81
HOXA4Q00056 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 131 ms