Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HNF4AP41235 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
HNF4AP41235 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
HNF4AP41235 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HNF4AP41235 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HNF4AP41235 ZNF285B-201ENST00000561698 1767 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HNF4AP41235 AC008568.2-201ENST00000623862 2313 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 AL391994.1-201ENST00000254724 282 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 RNA5SP51-201ENST00000364750 119 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 Y_RNA.311-201ENST00000365068 96 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 AL359837.1-201ENST00000381357 287 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AC007066.1-201ENST00000392902 381 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AL031679.1-201ENST00000400616 525 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AC068533.2-201ENST00000411872 306 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.48□□□□□ -1.85
HNF4AP41235 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC3.48□□□□□ -1.85
HNF4AP41235 AC107081.2-201ENST00000425779 802 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 AL050303.1-201ENST00000444356 458 ntTSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 BZW1P2-201ENST00000473537 826 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AC006483.1-201ENST00000487308 313 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 RPL7P23-201ENST00000493874 747 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 AC093895.1-203ENST00000506814 591 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.48□□□□□ -1.85
HNF4AP41235 RNU2-27P-201ENST00000516185 142 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC3.48□□□□□ -1.85
HNF4AP41235 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.48□□□□□ -1.85
HNF4AP41235 AC034105.4-201ENST00000568304 277 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AC002400.1-201ENST00000569310 726 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 MIR4738-201ENST00000579134 87 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AC006539.2-201ENST00000601729 572 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.48□□□□□ -1.85
HNF4AP41235 AL592221.1-201ENST00000605266 382 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AP000254.1-201ENST00000609934 520 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AC084782.3-201ENST00000612282 578 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AL607023.1-201ENST00000620045 248 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 FP475955.2-201ENST00000623720 458 ntTSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 AP003122.6-201ENST00000623831 495 ntBASIC3.48□□□□□ -1.85
HNF4AP41235 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HNF4AP41235 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.48□□□□□ -1.85
HNF4AP41235 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HNF4AP41235 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HNF4AP41235 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
HNF4AP41235 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HNF4AP41235 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.47□□□□□ -1.85
HNF4AP41235 AL079305.1-201ENST00000623159 3008 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.47□□□□□ -1.85
HNF4AP41235 RPL23AP57-201ENST00000332361 466 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC3.47□□□□□ -1.85
HNF4AP41235 RNU6-28P-201ENST00000362378 107 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 RNU6-621P-201ENST00000364752 109 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 TAF9BP1-201ENST00000396646 746 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC3.47□□□□□ -1.85
HNF4AP41235 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.47□□□□□ -1.85
HNF4AP41235 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.47□□□□□ -1.85
HNF4AP41235 RPL31P12-201ENST00000422587 358 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.47□□□□□ -1.85
HNF4AP41235 TRIAP1P1-201ENST00000427062 225 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.47□□□□□ -1.85
HNF4AP41235 AC007389.2-201ENST00000434630 306 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.47□□□□□ -1.85
HNF4AP41235 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.47□□□□□ -1.85
HNF4AP41235 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
HNF4AP41235 THAP5P1-201ENST00000439089 262 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.47□□□□□ -1.85
HNF4AP41235 TRIM60P18-201ENST00000441518 828 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.47□□□□□ -1.85
HNF4AP41235 KATNBL1P3-201ENST00000443475 909 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 MTND2P4-201ENST00000445034 1004 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 ARPC3P5-201ENST00000448802 534 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC3.47□□□□□ -1.85
HNF4AP41235 AC073387.1-201ENST00000453261 709 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 AC234775.1-201ENST00000454247 670 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 RPL18AP17-201ENST00000455326 198 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 MTND1P16-201ENST00000465177 898 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 FTH1P2-201ENST00000466086 412 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 AC023598.1-201ENST00000472521 361 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 MTCYBP17-201ENST00000503579 789 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
HNF4AP41235 UBE2NP1-201ENST00000545592 458 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 LINC02410-201ENST00000553095 393 ntTSL 2 BASIC3.47□□□□□ -1.85
HNF4AP41235 GTF2IP22-201ENST00000554443 182 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.47□□□□□ -1.85
HNF4AP41235 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC3.47□□□□□ -1.85
HNF4AP41235 MIR5186-201ENST00000577504 120 ntBASIC3.47□□□□□ -1.85
HNF4AP41235 AC138207.5-201ENST00000579561 409 ntTSL 3 BASIC3.47□□□□□ -1.85
HNF4AP41235 AC105224.1-201ENST00000587055 421 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 171.1 ms