Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC234782.4-201ENST00000417646 1048 ntBASIC2.82□□□□□ -1.96
CUX1P39880 AC106901.1-201ENST00000425086 698 ntBASIC2.82□□□□□ -1.96
CUX1P39880 WARS2P1-201ENST00000429678 537 ntBASIC2.82□□□□□ -1.96
CUX1P39880 MTND4LP12-201ENST00000448237 295 ntBASIC2.82□□□□□ -1.96
CUX1P39880 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC2.82□□□□□ -1.96
CUX1P39880 AC098799.2-201ENST00000509466 868 ntBASIC2.82□□□□□ -1.96
CUX1P39880 SNORA31.11-201ENST00000516528 139 ntBASIC2.82□□□□□ -1.96
CUX1P39880 AL354943.1-201ENST00000572103 781 ntBASIC2.82□□□□□ -1.96
CUX1P39880 AC124283.4-201ENST00000581815 456 ntBASIC2.82□□□□□ -1.96
CUX1P39880 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CUX1P39880 RNA5SP325-201ENST00000363756 130 ntBASIC2.81□□□□□ -1.96
CUX1P39880 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.81□□□□□ -1.96
CUX1P39880 AMD1P1-201ENST00000457220 922 ntBASIC2.81□□□□□ -1.96
CUX1P39880 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC2.81□□□□□ -1.96
CUX1P39880 AC069528.1-202ENST00000482888 637 ntBASIC2.81□□□□□ -1.96
CUX1P39880 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.81□□□□□ -1.96
CUX1P39880 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.81□□□□□ -1.96
CUX1P39880 IGLV3-17-201ENST00000519099 244 ntBASIC2.81□□□□□ -1.96
CUX1P39880 AC104581.2-201ENST00000572227 430 ntBASIC2.81□□□□□ -1.96
CUX1P39880 WISP1-OT1-201ENST00000602893 642 ntBASIC2.81□□□□□ -1.96
CUX1P39880 KATNBL1P1-201ENST00000605192 748 ntBASIC2.81□□□□□ -1.96
CUX1P39880 AC011890.2-201ENST00000613393 294 ntBASIC2.81□□□□□ -1.96
CUX1P39880 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
CUX1P39880 MTND4P23-201ENST00000447723 1363 ntBASIC2.81□□□□□ -1.96
CUX1P39880 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.8□□□□□ -1.96
CUX1P39880 RNA5SP138-201ENST00000365098 114 ntBASIC2.8□□□□□ -1.96
CUX1P39880 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.8□□□□□ -1.96
CUX1P39880 AC013404.1-201ENST00000413068 249 ntBASIC2.8□□□□□ -1.96
CUX1P39880 VN1R31P-201ENST00000417498 730 ntBASIC2.8□□□□□ -1.96
CUX1P39880 DPPA2P1-201ENST00000428060 556 ntBASIC2.8□□□□□ -1.96
CUX1P39880 FO393414.1-201ENST00000428697 1184 ntBASIC2.8□□□□□ -1.96
CUX1P39880 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.8□□□□□ -1.96
CUX1P39880 AL137159.1-201ENST00000452808 512 ntBASIC2.8□□□□□ -1.96
CUX1P39880 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC2.8□□□□□ -1.96
CUX1P39880 AC013444.2-201ENST00000603317 787 ntBASIC2.8□□□□□ -1.96
CUX1P39880 AL590099.1-201ENST00000615276 138 ntBASIC2.8□□□□□ -1.96
CUX1P39880 SNORD114-26-201ENST00000363543 72 ntBASIC2.79□□□□□ -1.96
CUX1P39880 POLHP1-201ENST00000411806 470 ntBASIC2.79□□□□□ -1.96
CUX1P39880 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.79□□□□□ -1.96
CUX1P39880 AL121594.1-201ENST00000475906 575 ntBASIC2.79□□□□□ -1.96
CUX1P39880 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC2.79□□□□□ -1.96
CUX1P39880 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.79□□□□□ -1.96
CUX1P39880 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.79□□□□□ -1.96
CUX1P39880 MIR4419B-201ENST00000577260 68 ntBASIC2.79□□□□□ -1.96
CUX1P39880 AL512598.1-201ENST00000610158 273 ntBASIC2.79□□□□□ -1.96
CUX1P39880 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.79□□□□□ -1.96
CUX1P39880 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
CUX1P39880 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
CUX1P39880 Y_RNA.191-201ENST00000363972 113 ntBASIC2.78□□□□□ -1.96
CUX1P39880 RPL17P12-201ENST00000413391 526 ntBASIC2.78□□□□□ -1.96
CUX1P39880 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.78□□□□□ -1.96
CUX1P39880 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC2.78□□□□□ -1.96
CUX1P39880 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CUX1P39880 MYL12BP1-201ENST00000569826 507 ntBASIC2.78□□□□□ -1.96
CUX1P39880 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC2.78□□□□□ -1.96
CUX1P39880 AC004943.3-201ENST00000624116 600 ntBASIC2.78□□□□□ -1.96
CUX1P39880 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CUX1P39880 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC2.78□□□□□ -1.97
CUX1P39880 HMGB1P47-201ENST00000511281 589 ntBASIC2.78□□□□□ -1.97
CUX1P39880 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC2.78□□□□□ -1.97
CUX1P39880 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.78□□□□□ -1.97
CUX1P39880 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC2.77□□□□□ -1.97
CUX1P39880 METTL21EP-201ENST00000298105 713 ntBASIC2.77□□□□□ -1.97
CUX1P39880 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.77□□□□□ -1.97
CUX1P39880 TRAPPC2P10-201ENST00000415662 323 ntBASIC2.77□□□□□ -1.97
CUX1P39880 UBE2V2P1-201ENST00000434717 398 ntBASIC2.77□□□□□ -1.97
CUX1P39880 AC007179.2-204ENST00000444001 765 ntTSL 3 BASIC2.77□□□□□ -1.97
CUX1P39880 AC243772.1-201ENST00000451620 410 ntBASIC2.77□□□□□ -1.97
CUX1P39880 SNRPGP3-201ENST00000469405 227 ntBASIC2.77□□□□□ -1.97
CUX1P39880 RPS26P21-201ENST00000475397 348 ntBASIC2.77□□□□□ -1.97
CUX1P39880 RNU1-40P-201ENST00000516816 164 ntBASIC2.77□□□□□ -1.97
CUX1P39880 RNU1-97P-201ENST00000516872 164 ntBASIC2.77□□□□□ -1.97
CUX1P39880 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.77□□□□□ -1.97
CUX1P39880 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.77□□□□□ -1.97
CUX1P39880 ZNF876P-202ENST00000398732 1485 ntBASIC2.76□□□□□ -1.97
CUX1P39880 MTND4P1-201ENST00000457501 1466 ntBASIC2.76□□□□□ -1.97
CUX1P39880 SNORD48-201ENST00000364953 64 ntBASIC2.76□□□□□ -1.97
CUX1P39880 RNU6-1320P-201ENST00000390838 107 ntBASIC2.76□□□□□ -1.97
CUX1P39880 RNU6-1269P-201ENST00000391139 107 ntBASIC2.76□□□□□ -1.97
CUX1P39880 RN7SKP101-201ENST00000411376 320 ntBASIC2.76□□□□□ -1.97
CUX1P39880 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.76□□□□□ -1.97
CUX1P39880 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC2.76□□□□□ -1.97
CUX1P39880 ARPC3P1-201ENST00000437218 533 ntBASIC2.76□□□□□ -1.97
CUX1P39880 AL353093.1-201ENST00000441292 436 ntBASIC2.76□□□□□ -1.97
CUX1P39880 RNU6-599P-201ENST00000459383 107 ntBASIC2.76□□□□□ -1.97
CUX1P39880 RNU6-1193P-201ENST00000459461 107 ntBASIC2.76□□□□□ -1.97
CUX1P39880 TOMM22P6-201ENST00000465035 409 ntBASIC2.76□□□□□ -1.97
CUX1P39880 AC109464.2-201ENST00000510242 943 ntBASIC2.76□□□□□ -1.97
CUX1P39880 AC109471.1-201ENST00000511631 612 ntBASIC2.76□□□□□ -1.97
CUX1P39880 RAC1P5-201ENST00000512182 576 ntBASIC2.76□□□□□ -1.97
CUX1P39880 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC2.76□□□□□ -1.97
CUX1P39880 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC2.76□□□□□ -1.97
CUX1P39880 RNU6-368P-201ENST00000620928 107 ntBASIC2.76□□□□□ -1.97
CUX1P39880 RNU6-538P-201ENST00000622329 107 ntBASIC2.76□□□□□ -1.97
CUX1P39880 API5P2-201ENST00000397055 1498 ntBASIC2.75□□□□□ -1.97
CUX1P39880 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
CUX1P39880 TAS2R15P-201ENST00000390674 928 ntBASIC2.75□□□□□ -1.97
CUX1P39880 HMGB1P13-201ENST00000406019 642 ntBASIC2.75□□□□□ -1.97
CUX1P39880 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.75□□□□□ -1.97
CUX1P39880 AC114973.1-201ENST00000429057 632 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms