Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL670379.8-201ENST00000605353 252 ntBASIC2.58□□□□□ -2
COL18A1P39060 AL670379.9-201ENST00000605428 253 ntBASIC2.58□□□□□ -2
COL18A1P39060 AL670379.7-201ENST00000605823 252 ntBASIC2.58□□□□□ -2
COL18A1P39060 MIR3670-4-201ENST00000612260 65 ntBASIC2.58□□□□□ -2
COL18A1P39060 AC121761.2-201ENST00000617300 689 ntBASIC2.58□□□□□ -2
COL18A1P39060 MIR4278-201ENST00000636094 69 ntBASIC2.58□□□□□ -2
COL18A1P39060 AC244517.1-201ENST00000606030 2086 ntBASIC2.58□□□□□ -2
COL18A1P39060 AC012361.1-201ENST00000447260 1498 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL18A1P39060 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.58□□□□□ -2
COL18A1P39060 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
COL18A1P39060 METTL21EP-201ENST00000298105 713 ntBASIC2.57□□□□□ -2
COL18A1P39060 Y_RNA.116-201ENST00000363292 103 ntBASIC2.57□□□□□ -2
COL18A1P39060 AL627390.1-201ENST00000396055 340 ntBASIC2.57□□□□□ -2
COL18A1P39060 RNA5SP344-201ENST00000411081 104 ntBASIC2.57□□□□□ -2
COL18A1P39060 RPS7P5-201ENST00000441482 581 ntBASIC2.57□□□□□ -2
COL18A1P39060 snoU13.18-201ENST00000459483 104 ntBASIC2.57□□□□□ -2
COL18A1P39060 AC096992.1-201ENST00000459808 709 ntBASIC2.57□□□□□ -2
COL18A1P39060 OR9N1P-202ENST00000494289 481 ntBASIC2.57□□□□□ -2
COL18A1P39060 NAMPTP2-201ENST00000505629 1115 ntBASIC2.57□□□□□ -2
COL18A1P39060 FAM92A1P1-201ENST00000528023 890 ntBASIC2.57□□□□□ -2
COL18A1P39060 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC2.57□□□□□ -2
COL18A1P39060 AC016911.1-201ENST00000613297 452 ntBASIC2.57□□□□□ -2
COL18A1P39060 AC004520.1-201ENST00000608362 1413 ntBASIC2.57□□□□□ -2
COL18A1P39060 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL18A1P39060 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.57□□□□□ -2
COL18A1P39060 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL18A1P39060 AC010385.1-201ENST00000412374 256 ntBASIC2.56□□□□□ -2
COL18A1P39060 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.56□□□□□ -2
COL18A1P39060 AL590623.1-201ENST00000427864 105 ntBASIC2.56□□□□□ -2
COL18A1P39060 TAF9P1-201ENST00000445421 515 ntBASIC2.56□□□□□ -2
COL18A1P39060 TAF9P2-201ENST00000454958 515 ntBASIC2.56□□□□□ -2
COL18A1P39060 SSR3-208ENST00000496050 579 ntTSL 4 BASIC2.56□□□□□ -2
COL18A1P39060 MTCO1P31-201ENST00000506355 492 ntBASIC2.56□□□□□ -2
COL18A1P39060 HMGB3P15-201ENST00000507326 574 ntBASIC2.56□□□□□ -2
COL18A1P39060 AC108078.2-201ENST00000510750 236 ntBASIC2.56□□□□□ -2
COL18A1P39060 RNA5SP182-201ENST00000516064 82 ntBASIC2.56□□□□□ -2
COL18A1P39060 RN7SKP234-201ENST00000517173 224 ntBASIC2.56□□□□□ -2
COL18A1P39060 AC008562.1-201ENST00000521763 330 ntBASIC2.56□□□□□ -2
COL18A1P39060 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC2.56□□□□□ -2
COL18A1P39060 ZNF192P1-203ENST00000565888 810 ntBASIC2.56□□□□□ -2
COL18A1P39060 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC2.56□□□□□ -2
COL18A1P39060 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC2.56□□□□□ -2
COL18A1P39060 AC048347.1-201ENST00000624621 427 ntBASIC2.56□□□□□ -2
COL18A1P39060 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.56□□□□□ -2
COL18A1P39060 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.56□□□□□ -2
COL18A1P39060 AF127577.6-201ENST00000623352 2191 ntBASIC2.56□□□□□ -2
COL18A1P39060 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.56□□□□□ -2
COL18A1P39060 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL18A1P39060 AC000367.1-201ENST00000452711 1766 ntBASIC2.56□□□□□ -2
COL18A1P39060 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.56□□□□□ -2
COL18A1P39060 AL353746.1-201ENST00000566293 6881 ntBASIC2.56□□□□□ -2
COL18A1P39060 RNA5SP391-201ENST00000363456 119 ntBASIC2.56□□□□□ -2
COL18A1P39060 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
COL18A1P39060 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.56□□□□□ -2
COL18A1P39060 AC104435.1-201ENST00000483483 166 ntBASIC2.56□□□□□ -2
COL18A1P39060 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC2.56□□□□□ -2
COL18A1P39060 GZMAP1-201ENST00000503054 631 ntBASIC2.56□□□□□ -2
COL18A1P39060 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC2.56□□□□□ -2
COL18A1P39060 AC022784.5-201ENST00000522241 437 ntBASIC2.56□□□□□ -2
COL18A1P39060 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC2.56□□□□□ -2
COL18A1P39060 OR4H12P-201ENST00000556269 907 ntBASIC2.56□□□□□ -2
COL18A1P39060 MIR5089-201ENST00000580047 84 ntBASIC2.56□□□□□ -2
COL18A1P39060 AC068790.3-201ENST00000602988 553 ntBASIC2.56□□□□□ -2
COL18A1P39060 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.56□□□□□ -2
COL18A1P39060 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC2.56□□□□□ -2
COL18A1P39060 AP001148.1-201ENST00000624124 2359 ntBASIC2.56□□□□□ -2
COL18A1P39060 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC2.55□□□□□ -2
COL18A1P39060 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.55□□□□□ -2
COL18A1P39060 RNA5SP190-201ENST00000365222 118 ntBASIC2.55□□□□□ -2
COL18A1P39060 AL645634.2-201ENST00000431956 411 ntTSL 3 BASIC2.55□□□□□ -2
COL18A1P39060 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC2.55□□□□□ -2
COL18A1P39060 RPL23AP33-201ENST00000442301 452 ntBASIC2.55□□□□□ -2
COL18A1P39060 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC2.55□□□□□ -2
COL18A1P39060 AC092155.1-201ENST00000444672 573 ntTSL 4 BASIC2.55□□□□□ -2
COL18A1P39060 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC2.55□□□□□ -2
COL18A1P39060 AC092691.3-201ENST00000482766 510 ntTSL 3 BASIC2.55□□□□□ -2
COL18A1P39060 AC005840.1-201ENST00000498412 377 ntBASIC2.55□□□□□ -2
COL18A1P39060 AC002460.1-201ENST00000504394 370 ntTSL 3 BASIC2.55□□□□□ -2
COL18A1P39060 AC090071.1-201ENST00000507713 644 ntBASIC2.55□□□□□ -2
COL18A1P39060 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC2.55□□□□□ -2
COL18A1P39060 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC2.55□□□□□ -2
COL18A1P39060 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC2.55□□□□□ -2
COL18A1P39060 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC2.55□□□□□ -2
COL18A1P39060 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC2.55□□□□□ -2
COL18A1P39060 AC067805.1-201ENST00000559344 470 ntBASIC2.55□□□□□ -2
COL18A1P39060 MIR4303-201ENST00000581299 66 ntBASIC2.55□□□□□ -2
COL18A1P39060 AC018618.2-201ENST00000604770 446 ntBASIC2.55□□□□□ -2
COL18A1P39060 AC091046.2-201ENST00000620775 665 ntBASIC2.55□□□□□ -2
COL18A1P39060 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC2.55□□□□□ -2
COL18A1P39060 FAM157B-203ENST00000639350 358 ntBASIC2.55□□□□□ -2
COL18A1P39060 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC2.55□□□□□ -2
COL18A1P39060 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
COL18A1P39060 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC2.55□□□□□ -2
COL18A1P39060 MTND5P3-201ENST00000438536 1800 ntBASIC2.54□□□□□ -2
COL18A1P39060 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
COL18A1P39060 RNU6-661P-201ENST00000362409 107 ntBASIC2.54□□□□□ -2
COL18A1P39060 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
COL18A1P39060 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC2.54□□□□□ -2
COL18A1P39060 RNU6-98P-201ENST00000384173 107 ntBASIC2.54□□□□□ -2
COL18A1P39060 MIR499A-201ENST00000384903 122 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 205.1 ms