Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 IGLVIV-53-201ENST00000520107 367 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 DEFB131D-201ENST00000526803 184 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
HOXC9P31274 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.97□□□□□ -1.77
HOXC9P31274 AP005205.1-201ENST00000563503 508 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.97□□□□□ -1.77
HOXC9P31274 Z99497.2-201ENST00000603634 310 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AP000811.1-201ENST00000603803 651 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AC018714.1-201ENST00000605028 208 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AC072039.2-201ENST00000608883 439 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 AC009318.4-201ENST00000620496 486 ntBASIC3.97□□□□□ -1.77
HOXC9P31274 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC3.97□□□□□ -1.77
HOXC9P31274 ZNF736P9Y-201ENST00000439586 1345 ntBASIC3.96□□□□□ -1.77
HOXC9P31274 AC096644.4-201ENST00000563417 2912 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXC9P31274 AC062016.1-201ENST00000355719 319 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 Y_RNA.18-201ENST00000362461 102 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 RNVU1-3-201ENST00000364313 161 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 SNORD82-201ENST00000365530 70 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 SNORA48.8-201ENST00000391324 134 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXC9P31274 CYCSP45-201ENST00000402289 315 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 MTCYBP38-201ENST00000417160 1123 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 AC127526.1-201ENST00000417526 366 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 AL645937.1-202ENST00000421799 937 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 AL445567.1-201ENST00000439121 144 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXC9P31274 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXC9P31274 ZNF736P5Y-201ENST00000451173 805 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 MTCO3P11-201ENST00000455103 774 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXC9P31274 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXC9P31274 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXC9P31274 AC021146.1-201ENST00000511202 716 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
HOXC9P31274 SCGB1D5P-201ENST00000515134 247 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 RN7SKP60-201ENST00000516985 239 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 NAP1L1P1-201ENST00000524793 1063 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXC9P31274 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXC9P31274 AC079600.2-201ENST00000550076 130 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXC9P31274 MIR4637-201ENST00000582405 84 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC3.96□□□□□ -1.78
HOXC9P31274 AC004987.4-201ENST00000603383 338 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 AC090116.1-201ENST00000615679 446 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 AF246928.1-201ENST00000623768 87 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 MIR3974-201ENST00000637126 96 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXC9P31274 AC012321.1-201ENST00000561622 1588 ntBASIC3.96□□□□□ -1.78
HOXC9P31274 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXC9P31274 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
HOXC9P31274 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXC9P31274 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXC9P31274 AL079343.1-201ENST00000572358 1771 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXC9P31274 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXC9P31274 RPL7P26-201ENST00000333817 754 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 SNORA70E-201ENST00000384492 135 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 Y_RNA.560-201ENST00000384689 102 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 RNA5SP239-201ENST00000410218 129 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AC104653.1-201ENST00000420579 578 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXC9P31274 AL139281.1-201ENST00000422120 335 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AL953862.1-201ENST00000423016 168 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXC9P31274 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXC9P31274 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXC9P31274 MTND4P6-201ENST00000438297 472 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXC9P31274 RPS24P13-201ENST00000442520 397 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXC9P31274 ARPC3P2-201ENST00000457786 533 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AC026410.2-201ENST00000460281 156 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AC097493.1-201ENST00000463958 372 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AC072039.1-201ENST00000477611 581 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.95□□□□□ -1.78
HOXC9P31274 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXC9P31274 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.95□□□□□ -1.78
HOXC9P31274 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXC9P31274 RNU6-678P-201ENST00000516832 109 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AC104986.1-201ENST00000517978 436 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 IGKV2D-36-201ENST00000518643 226 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC3.95□□□□□ -1.78
HOXC9P31274 AC015871.2-201ENST00000603605 948 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 AL591516.1-201ENST00000611326 274 ntBASIC3.95□□□□□ -1.78
HOXC9P31274 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXC9P31274 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXC9P31274 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXC9P31274 AL133412.1-201ENST00000380194 2992 ntBASIC3.94□□□□□ -1.78
HOXC9P31274 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
HOXC9P31274 ZNF33CP-201ENST00000432492 2030 ntBASIC3.94□□□□□ -1.78
HOXC9P31274 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
HOXC9P31274 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
HOXC9P31274 RNU6-553P-201ENST00000364047 96 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms