Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 SNRPFP1-201ENST00000414761 252 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 TMSB10P2-201ENST00000416049 131 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 SDCBPP3-201ENST00000419629 891 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 RPS29P17-201ENST00000430795 166 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD3P31249 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
HOXD3P31249 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD3P31249 AC093156.1-201ENST00000440382 670 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC016691.1-201ENST00000441321 413 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 AC114755.5-201ENST00000447760 831 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 RPS17P13-201ENST00000448974 407 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 PPIAP3-201ENST00000450588 505 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 CACYBPP2-201ENST00000453625 678 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC007967.1-201ENST00000455422 1159 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 UBDP1-202ENST00000457888 382 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AL591473.1-201ENST00000464297 313 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC091153.1-201ENST00000466297 402 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC006512.1-201ENST00000468816 291 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC022795.1-201ENST00000473808 480 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 ST13P14-201ENST00000474095 734 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC233702.1-201ENST00000482905 502 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC068305.1-201ENST00000497406 726 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 HMGN1P12-201ENST00000499125 195 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 MTCYBP18-201ENST00000501056 747 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 SLC25A15P5-201ENST00000508033 253 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD3P31249 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD3P31249 RN7SKP116-201ENST00000516902 319 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 IGHVIII-2-1-201ENST00000518843 291 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 MRPL49P2-201ENST00000521066 465 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 AP003072.2-201ENST00000527756 676 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC103843.2-201ENST00000530523 682 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 CYCSP29-201ENST00000533731 318 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 OR8L1P-201ENST00000534005 955 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 CR383656.7-201ENST00000548164 174 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD3P31249 AL133153.1-201ENST00000557756 303 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.46□□□□□ -1.86
HOXD3P31249 BPIFA4P-203ENST00000603168 689 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AL158211.4-201ENST00000606988 584 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AL031666.3-201ENST00000609320 1006 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD3P31249 AL354950.2-201ENST00000617939 290 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD3P31249 AC024940.5-201ENST00000622889 474 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.46□□□□□ -1.86
HOXD3P31249 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.46□□□□□ -1.86
HOXD3P31249 CPHL1P-201ENST00000461341 3407 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC018529.3-201ENST00000624212 2254 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 AC139769.1-204ENST00000472297 1931 ntBASIC3.46□□□□□ -1.86
HOXD3P31249 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXD3P31249 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD3P31249 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.46□□□□□ -1.86
HOXD3P31249 SCOC-202ENST00000394201 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC3.46□□□□□ -1.86
HOXD3P31249 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD3P31249 Z82217.1-201ENST00000625157 8149 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 HMGB1-204ENST00000399489 1727 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD3P31249 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
HOXD3P31249 CKAP2P1-201ENST00000555477 2049 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HOXD3P31249 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.45□□□□□ -1.86
HOXD3P31249 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
HOXD3P31249 RNA5SP388-201ENST00000362584 119 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 RNU6-278P-201ENST00000390945 109 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 MIR921-201ENST00000401133 56 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 RN7SKP285-201ENST00000410137 318 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 RPL21P111-201ENST00000418453 477 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC137499.1-201ENST00000427602 88 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 RPL23AP25-201ENST00000430973 463 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 CKS1BP5-201ENST00000434172 273 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.45□□□□□ -1.86
HOXD3P31249 MTND4P25-201ENST00000441039 533 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 PHBP16-201ENST00000446318 950 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AL590399.6-201ENST00000446396 307 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 RPL23AP43-201ENST00000446445 471 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC012671.1-201ENST00000451912 203 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 snoU109.4-201ENST00000458953 143 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 RPS20P20-201ENST00000460498 340 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC108751.2-201ENST00000469993 231 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC105137.1-201ENST00000484355 562 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC135721.1-201ENST00000497954 479 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 MTCO2P30-201ENST00000503662 364 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD3P31249 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.45□□□□□ -1.86
HOXD3P31249 AP000827.1-201ENST00000527814 258 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 OR4R1P-201ENST00000529879 463 ntBASIC3.45□□□□□ -1.86
HOXD3P31249 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.45□□□□□ -1.86
HOXD3P31249 ARL2BPP2-201ENST00000550907 489 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 130.5 ms