Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RNU6-1208P-201ENST00000459588 107 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 COX6B1P2-201ENST00000489624 230 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AC022133.1-201ENST00000490961 571 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AL049874.2-201ENST00000492636 288 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AP001086.1-201ENST00000494882 321 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 IGBP1P4-201ENST00000503202 879 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 HMGN1P9-201ENST00000515212 298 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RPL7P20-201ENST00000520308 745 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 HIGD1AP5-201ENST00000529959 259 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 DYNLL1P4-201ENST00000549314 266 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 RPL23AP87-202ENST00000573039 466 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 VN1R80P-201ENST00000597126 338 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 AC092807.2-201ENST00000609367 243 ntBASIC5.65□□□□□ -1.5
TRAIPQ9BWF2 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
TRAIPQ9BWF2 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.65□□□□□ -1.51
TRAIPQ9BWF2 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
TRAIPQ9BWF2 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AL133412.1-201ENST00000380194 2992 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 Y_RNA.166-201ENST00000363730 102 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 Y_RNA.356-201ENST00000365475 113 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 OR1L6-202ENST00000373684 1044 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 MIR301A-201ENST00000385261 86 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 SNORD70.1-201ENST00000391007 85 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 NCOR1P3-201ENST00000420479 303 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AL451062.2-201ENST00000427515 271 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AC007919.1-201ENST00000429380 217 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 RPL19P16-201ENST00000433839 588 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 IFNA20P-201ENST00000436840 528 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AC104136.1-201ENST00000512969 394 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AC008033.2-201ENST00000542626 177 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AC243960.4-201ENST00000600532 288 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AC092747.3-201ENST00000603769 301 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 MIR15A-201ENST00000607334 83 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 uc_338.5-201ENST00000611839 155 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AL627230.1-201ENST00000613077 211 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AL591926.8-201ENST00000616876 211 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 AL445363.3-201ENST00000623080 671 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 MARK2P15-201ENST00000432204 2186 ntBASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRAIPQ9BWF2 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 RNA5SP443-201ENST00000363083 132 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 TRAV26-1-201ENST00000390455 537 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 MTCO3P46-201ENST00000425787 232 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC091685.2-201ENST00000454924 864 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 RPS3AP41-201ENST00000462701 778 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 APOOP4-201ENST00000513530 597 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 RNU6-914P-201ENST00000516749 109 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 MIR4691-201ENST00000583764 85 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC005498.1-201ENST00000592125 465 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 AC011487.3-201ENST00000593607 453 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 FAM25E-202ENST00000608562 189 ntBASIC5.63□□□□□ -1.51
TRAIPQ9BWF2 Xist_exon1.1-201ENST00000618930 85 ntBASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms