Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 RNU6-583P-201ENST00000516012 92 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 SNORA31.26-201ENST00000517250 137 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC245166.1-201ENST00000521012 253 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 HTN3-205ENST00000530128 775 ntAPPRIS P2 TSL 2 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC015688.2-201ENST00000584523 262 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AL133393.1-201ENST00000603277 287 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC022509.4-201ENST00000621404 572 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC099506.2-201ENST00000623074 221 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 AC084035.1-201ENST00000634543 607 ntBASIC3.1□□□□□ -1.91
VPS35Q96QK1 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS35Q96QK1 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
VPS35Q96QK1 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.1□□□□□ -1.91
VPS35Q96QK1 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
VPS35Q96QK1 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
VPS35Q96QK1 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 RNA5SP387-201ENST00000364226 106 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 U8.9-201ENST00000365667 134 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 SNORD15B-201ENST00000384714 146 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 MIR135A2-201ENST00000384854 100 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 MIR122-201ENST00000385044 85 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 SNORA26.7-201ENST00000391288 122 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AL356131.1-201ENST00000405826 414 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 RNA5SP80-201ENST00000410475 111 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 RNA5SP344-201ENST00000411081 104 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 RPL32P35-201ENST00000415214 394 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC006960.1-201ENST00000419980 153 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 ZDHHC20P2-201ENST00000424108 429 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 SETP8-201ENST00000435341 628 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC108734.1-201ENST00000439549 399 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 ZNF736P1Y-201ENST00000440402 1276 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC093392.2-201ENST00000450682 337 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AL353691.1-201ENST00000451332 387 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 MTCO3P11-201ENST00000455103 774 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC011979.1-201ENST00000472300 483 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC006445.1-201ENST00000491925 405 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC008837.2-201ENST00000513076 418 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC022861.1-201ENST00000522981 663 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 ERHP1-201ENST00000523006 310 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC021451.1-201ENST00000523498 1129 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AP001804.3-201ENST00000525146 880 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 AADACP1-206ENST00000561502 1193 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AP005205.1-201ENST00000563503 508 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC010653.1-201ENST00000571108 881 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 TMF1P1-201ENST00000576058 373 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 UBL5P2-201ENST00000583788 219 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC021749.1-201ENST00000604322 607 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC004853.1-201ENST00000604902 698 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AL121652.1-201ENST00000608851 448 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 AC002076.2-201ENST00000617362 122 ntBASIC3.09□□□□□ -1.91
VPS35Q96QK1 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.09□□□□□ -1.91
VPS35Q96QK1 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.92
VPS35Q96QK1 TAB3P1-202ENST00000452645 1634 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 NACA3P-201ENST00000359690 648 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 MIR493-201ENST00000385254 89 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 HMGB1P17-201ENST00000403495 628 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 RPL7P25-201ENST00000404151 721 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 VN1R51P-201ENST00000411675 945 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AL139281.1-201ENST00000422120 335 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 NANOGP2-201ENST00000435391 727 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 RPS12P18-201ENST00000442381 270 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 RPS3AP12-201ENST00000443616 753 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 AC092162.2-204ENST00000451851 566 ntTSL 4 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 RPL18AP17-201ENST00000455326 198 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 MTND2P39-201ENST00000457230 764 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 RNA5SP310-201ENST00000459084 116 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 HMGN2P13-201ENST00000476476 274 ntBASIC3.08□□□□□ -1.92
VPS35Q96QK1 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.08□□□□□ -1.92
VPS35Q96QK1 RN7SKP57-201ENST00000517248 293 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms