Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AL645568.3-201ENST00000433683 316 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC064862.4-201ENST00000442180 334 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 HMGB1P30-201ENST00000492455 606 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 PLCXD2-AS1-201ENST00000493131 491 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC007016.1-201ENST00000512110 244 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RNU6-470P-201ENST00000515954 104 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RNU1-86P-201ENST00000516108 154 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RNU1-107P-201ENST00000516617 154 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RNU6-1137P-201ENST00000517073 99 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RNA5SP290-201ENST00000517133 127 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC087369.1-201ENST00000520775 996 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 NRBF2P4-201ENST00000520874 850 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 MYL6-213ENST00000549017 502 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 TRAV37-201ENST00000553906 342 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 LRRC37A5P-203ENST00000580181 585 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 MIR3614-201ENST00000581261 86 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC011494.1-201ENST00000596454 237 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC012616.1-201ENST00000600294 197 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC007938.3-201ENST00000604965 623 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC106900.2-201ENST00000604994 317 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AL139124.1-201ENST00000609123 421 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 MIR6133-201ENST00000617057 108 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 CU639417.4-201ENST00000623928 207 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 PABPC1P6-201ENST00000445594 1829 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 MTND5P16-201ENST00000460269 1703 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AC025031.4-201ENST00000621248 3271 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 RNU6-1115P-201ENST00000362490 106 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 RN7SKP145-201ENST00000363291 303 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 SNORA70.6-201ENST00000383934 134 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.463-201ENST00000384271 102 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 SNORD56.6-201ENST00000384569 71 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 SNORA75.6-201ENST00000391318 127 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 U3.35-201ENST00000408405 208 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 RN7SKP206-201ENST00000410823 293 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 RPL12P18-201ENST00000437175 325 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC073465.2-201ENST00000440938 498 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 MED28P3-201ENST00000444288 531 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 FTH1P25-201ENST00000447665 469 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 RN7SL197P-201ENST00000466981 299 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 RPS4XP1-201ENST00000482189 787 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AL160314.1-201ENST00000490836 438 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 SNORA70.16-201ENST00000516390 95 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 Vault.1-201ENST00000516474 102 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 SCARNA16.2-201ENST00000516520 172 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC004024.1-201ENST00000549244 247 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 ZNF432-203ENST00000597273 624 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC006157.1-201ENST00000611750 366 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AL161616.1-201ENST00000611867 286 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 AC007485.1-201ENST00000616755 206 ntBASIC4.28□□□□□ -1.72
CCDC140Q96MF4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms