Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 NBEAP1-201ENST00000554452 979 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 MIR4509-3-201ENST00000578671 94 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 OR4K8P-201ENST00000578842 1048 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 MIR4509-2-201ENST00000583920 94 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC245884.10-201ENST00000597355 337 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC008739.3-201ENST00000603262 127 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 DUXAP11-201ENST00000603858 526 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 RNU4-5P-201ENST00000607255 135 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 MIR4509-1-201ENST00000618224 94 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 CRYM-AS1-204ENST00000637983 556 ntBASIC3.19□□□□□ -1.9
VPS39Q96JC1 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.19□□□□□ -1.9
VPS39Q96JC1 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 RNU2-42P-201ENST00000410697 113 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 OFD1P11Y-201ENST00000418213 1177 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 LINC02263-202ENST00000420701 597 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS39Q96JC1 GTF2IP7-202ENST00000436677 309 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 HMGB3P6-201ENST00000444896 598 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AL358794.1-201ENST00000445689 381 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 RPL39P6-201ENST00000448289 150 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AL353691.1-201ENST00000451332 387 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 CYCSP35-201ENST00000451978 304 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 ELOCP23-201ENST00000452014 332 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 RPL21P10-201ENST00000463521 490 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
VPS39Q96JC1 RN7SL293P-201ENST00000481765 281 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC023424.2-201ENST00000493479 777 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 DSTNP2-201ENST00000504533 515 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC110794.1-201ENST00000505816 425 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 RAC1P5-201ENST00000512182 576 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 DUXAP2-201ENST00000519198 589 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 LYZ-203ENST00000549690 669 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 RPL21P12-201ENST00000559810 515 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AL049838.1-201ENST00000563647 981 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 MIR2682-201ENST00000580305 110 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 U73023.1-201ENST00000603134 700 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC080013.4-201ENST00000607624 649 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 DUXAP10-204ENST00000612052 616 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 uc_338.25-201ENST00000613756 156 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC009464.1-201ENST00000615731 469 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 OR4G3P-201ENST00000633500 913 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 ANKRD36C-201ENST00000295246 2272 ntTSL 5 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 AC097714.1-201ENST00000511272 1647 ntBASIC3.18□□□□□ -1.9
VPS39Q96JC1 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.18□□□□□ -1.9
VPS39Q96JC1 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 FRG1BP-201ENST00000278882 761 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
VPS39Q96JC1 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 TAF9BP1-201ENST00000396646 746 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 RN7SKP27-201ENST00000410684 333 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 MTCO2P8-201ENST00000412213 658 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC063979.1-201ENST00000415539 377 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC007742.1-201ENST00000425789 329 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AL590233.1-201ENST00000430017 456 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 SETP8-201ENST00000435341 628 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 ELOCP26-201ENST00000436067 329 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC092427.1-201ENST00000439177 601 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC005297.2-201ENST00000450430 606 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 PNPLA4P1-201ENST00000458328 305 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC092798.1-201ENST00000458542 409 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC008155.2-201ENST00000464337 397 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 WDR78-207ENST00000488333 613 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 RPL30P5-201ENST00000494923 336 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC022483.1-201ENST00000514020 567 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC093025.1-201ENST00000547795 569 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 HSPE1P3-201ENST00000559254 309 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 MIR3912-201ENST00000577566 105 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 BNIP3P40-201ENST00000596017 556 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AL138478.1-201ENST00000612252 832 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC005332.6-201ENST00000613178 446 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC090772.4-201ENST00000623599 362 ntBASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.17□□□□□ -1.9
VPS39Q96JC1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 147.3 ms