Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 AC104564.1-201ENST00000493028 407 ntBASIC1.57□□□□□ -2.16
USF3Q68DE3 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC1.57□□□□□ -2.16
USF3Q68DE3 AC008700.1-201ENST00000512571 654 ntTSL 3 BASIC1.57□□□□□ -2.16
USF3Q68DE3 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC1.57□□□□□ -2.16
USF3Q68DE3 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC1.57□□□□□ -2.16
USF3Q68DE3 DNAJC19P9-201ENST00000555084 351 ntBASIC1.57□□□□□ -2.16
USF3Q68DE3 AC068714.1-201ENST00000559623 800 ntBASIC1.57□□□□□ -2.16
USF3Q68DE3 AC067838.1-201ENST00000606064 577 ntBASIC1.57□□□□□ -2.16
USF3Q68DE3 AC010872.1-201ENST00000624225 675 ntBASIC1.57□□□□□ -2.16
USF3Q68DE3 FO624990.1-201ENST00000636373 85 ntBASIC1.57□□□□□ -2.16
USF3Q68DE3 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
USF3Q68DE3 MIRLET7G-201ENST00000362280 84 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 RNA5SP190-201ENST00000365222 118 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 MIR144-201ENST00000384886 86 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.56□□□□□ -2.16
USF3Q68DE3 RPS7P9-201ENST00000414704 586 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 SSXP9-201ENST00000417503 292 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC1.56□□□□□ -2.16
USF3Q68DE3 AL021397.1-201ENST00000451806 248 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AC140059.1-201ENST00000489238 361 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 NAMPTP2-201ENST00000505629 1115 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.56□□□□□ -2.16
USF3Q68DE3 RNA5SP82-201ENST00000516707 92 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 RN7SKP5-201ENST00000517045 272 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AC008083.2-201ENST00000546707 476 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 RPS3AP4-201ENST00000555161 764 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.56□□□□□ -2.16
USF3Q68DE3 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.56□□□□□ -2.16
USF3Q68DE3 CUL4AP1-201ENST00000514750 1863 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC1.56□□□□□ -2.16
USF3Q68DE3 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC1.56□□□□□ -2.16
USF3Q68DE3 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
USF3Q68DE3 HSPE1P11-201ENST00000339579 310 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC1.56□□□□□ -2.16
USF3Q68DE3 AC022022.1-201ENST00000430304 178 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC1.56□□□□□ -2.16
USF3Q68DE3 CASP3P1-201ENST00000446037 609 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 RPS29P11-201ENST00000496507 171 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC1.56□□□□□ -2.16
USF3Q68DE3 ARL2BPP2-201ENST00000550907 489 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.56□□□□□ -2.16
USF3Q68DE3 AL161713.1-201ENST00000555538 145 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC1.56□□□□□ -2.16
USF3Q68DE3 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC1.56□□□□□ -2.16
USF3Q68DE3 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC1.56□□□□□ -2.16
USF3Q68DE3 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.56□□□□□ -2.16
USF3Q68DE3 AC090617.7-201ENST00000623952 126 ntBASIC1.56□□□□□ -2.16
USF3Q68DE3 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC1.56□□□□□ -2.16
USF3Q68DE3 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
USF3Q68DE3 C1D-204ENST00000410067 736 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
USF3Q68DE3 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.55□□□□□ -2.16
USF3Q68DE3 SNRPFP4-201ENST00000456366 242 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AC012170.1-201ENST00000495139 359 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC1.55□□□□□ -2.16
USF3Q68DE3 PSMA6P4-201ENST00000603247 718 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AL135786.2-201ENST00000608422 615 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AC215522.3-201ENST00000635602 354 ntTSL 5 BASIC1.55□□□□□ -2.16
USF3Q68DE3 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.55□□□□□ -2.16
USF3Q68DE3 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
USF3Q68DE3 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
USF3Q68DE3 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC1.55□□□□□ -2.16
USF3Q68DE3 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.55□□□□□ -2.16
USF3Q68DE3 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC1.55□□□□□ -2.16
USF3Q68DE3 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.55□□□□□ -2.16
USF3Q68DE3 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC1.55□□□□□ -2.16
USF3Q68DE3 AL031659.1-201ENST00000447075 539 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.55□□□□□ -2.16
USF3Q68DE3 RPL21P39-201ENST00000463605 483 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 NPY1R-204ENST00000509586 1017 ntTSL 2 BASIC1.55□□□□□ -2.16
USF3Q68DE3 MTCYBP37-201ENST00000510642 1133 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 RN7SKP96-201ENST00000516948 297 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.55□□□□□ -2.16
USF3Q68DE3 AC124283.4-201ENST00000581815 456 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC1.55□□□□□ -2.16
USF3Q68DE3 AC013444.2-201ENST00000603317 787 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AL353748.2-201ENST00000622148 471 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AC091953.2-201ENST00000623979 160 ntBASIC1.55□□□□□ -2.16
USF3Q68DE3 AP003171.2-202ENST00000634657 355 ntTSL 5 BASIC1.55□□□□□ -2.16
USF3Q68DE3 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC1.54□□□□□ -2.16
USF3Q68DE3 EFTUD1P2-201ENST00000514817 1603 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 AL139276.1-201ENST00000311910 1001 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 RNU6-392P-201ENST00000364926 101 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 U3.15-201ENST00000365398 212 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 MIR124-3-201ENST00000384866 87 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.54□□□□□ -2.16
USF3Q68DE3 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.54□□□□□ -2.16
USF3Q68DE3 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC1.54□□□□□ -2.16
USF3Q68DE3 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC1.54□□□□□ -2.16
USF3Q68DE3 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC1.54□□□□□ -2.16
USF3Q68DE3 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC1.54□□□□□ -2.16
USF3Q68DE3 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC1.54□□□□□ -2.16
USF3Q68DE3 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC1.54□□□□□ -2.16
USF3Q68DE3 AC104307.1-201ENST00000616142 196 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC1.54□□□□□ -2.16
USF3Q68DE3 MIR4278-201ENST00000636094 69 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 MTND4P23-201ENST00000447723 1363 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 KPNA2P1-201ENST00000458289 1591 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 SNORA31-201ENST00000362607 130 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 RNU6-225P-201ENST00000384613 103 ntBASIC1.54□□□□□ -2.16
USF3Q68DE3 Y_RNA.540-201ENST00000384638 111 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms