Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 RNA5SP402-201ENST00000517148 110 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AC015720.1-201ENST00000565251 277 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD9Q3L8U1 WWP1P1-201ENST00000466609 2769 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
CHD9Q3L8U1 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC1.71□□□□□ -2.14
CHD9Q3L8U1 Y_RNA.178-201ENST00000363832 102 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 BX510359.4-201ENST00000423750 193 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 HMGN2P19-201ENST00000425149 265 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AL157827.1-201ENST00000447622 132 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AC135279.1-201ENST00000543493 504 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 SNORD53B-201ENST00000577887 78 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.71□□□□□ -2.14
CHD9Q3L8U1 AL353770.2-201ENST00000620024 78 ntBASIC1.71□□□□□ -2.14
CHD9Q3L8U1 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC1.71□□□□□ -2.14
CHD9Q3L8U1 MTND5P3-201ENST00000438536 1800 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 RNU1-93P-201ENST00000364704 169 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 MTCO3P31-201ENST00000405526 789 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 AL021397.1-201ENST00000451806 248 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC1.7□□□□□ -2.14
CHD9Q3L8U1 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC1.7□□□□□ -2.14
CHD9Q3L8U1 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
CHD9Q3L8U1 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC1.7□□□□□ -2.14
CHD9Q3L8U1 Y_RNA.205-201ENST00000364128 113 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 AC013470.3-201ENST00000420252 1194 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 HIGD1AP11-201ENST00000438361 280 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.7□□□□□ -2.14
CHD9Q3L8U1 AL845331.3-202ENST00000562856 261 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 AC002984.1-201ENST00000591692 448 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 KATNBL1P1-201ENST00000605192 748 ntBASIC1.7□□□□□ -2.14
CHD9Q3L8U1 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
CHD9Q3L8U1 XKRYP4-201ENST00000414395 483 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 RPS4XP11-201ENST00000446897 772 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 XKRYP5-201ENST00000449659 483 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 HMGB1P47-201ENST00000511281 589 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 ZNF542P-204ENST00000482727 1305 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 UBE2V1P5-201ENST00000440070 405 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 AC092954.1-201ENST00000609121 445 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 OR10AB1P-201ENST00000609613 938 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 SNORA16.1-201ENST00000364597 132 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 AL513321.1-201ENST00000441175 761 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC1.69□□□□□ -2.14
CHD9Q3L8U1 LTV1P1-201ENST00000510683 1237 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 AP000553.5-201ENST00000641933 54 ntBASIC1.69□□□□□ -2.14
CHD9Q3L8U1 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 RNA5SP27-201ENST00000363839 119 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 MTND2P29-201ENST00000438595 412 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 RNU7-170P-201ENST00000459303 61 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 RPL23AP44-201ENST00000482216 473 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 AC011604.1-201ENST00000545978 196 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 AL139286.1-201ENST00000604465 483 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 AC091152.2-201ENST00000591628 2569 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 AC095050.2-201ENST00000510748 1458 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 FNDC3CP-201ENST00000420795 1155 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 SNORA70.14-201ENST00000516205 110 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 C11orf65-206ENST00000529391 973 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 MIR4419B-201ENST00000577260 68 ntBASIC1.68□□□□□ -2.14
CHD9Q3L8U1 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 MFF-206ENST00000392059 1710 ntTSL 5 BASIC1.68□□□□□ -2.14
CHD9Q3L8U1 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AL365400.1-201ENST00000431854 640 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 OR7L1P-201ENST00000456181 380 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC105031.3-201ENST00000524359 616 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC087468.1-201ENST00000604365 630 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 U73479.1-201ENST00000618062 168 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
CHD9Q3L8U1 NEK4P1-201ENST00000433383 879 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 RPL34P26-201ENST00000445636 354 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 TPT1P14-201ENST00000448018 505 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 HMGN1P8-201ENST00000463578 288 ntBASIC1.67□□□□□ -2.14
CHD9Q3L8U1 AC093331.1-201ENST00000521474 169 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms