Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC4.12□□□□□ -1.75
CIITAP33076 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC4.12□□□□□ -1.75
CIITAP33076 RN7SKP18-201ENST00000516005 275 ntBASIC4.12□□□□□ -1.75
CIITAP33076 MIR2114-201ENST00000516645 80 ntBASIC4.12□□□□□ -1.75
CIITAP33076 AP004247.1-201ENST00000531556 1289 ntBASIC4.12□□□□□ -1.75
CIITAP33076 AC013828.2-201ENST00000532487 235 ntBASIC4.12□□□□□ -1.75
CIITAP33076 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC4.12□□□□□ -1.75
CIITAP33076 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.12□□□□□ -1.75
CIITAP33076 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.12□□□□□ -1.75
CIITAP33076 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC4.12□□□□□ -1.75
CIITAP33076 MAGOH2P-202ENST00000584384 429 ntBASIC4.12□□□□□ -1.75
CIITAP33076 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC4.12□□□□□ -1.75
CIITAP33076 AL159169.3-201ENST00000608871 561 ntBASIC4.12□□□□□ -1.75
CIITAP33076 AC008498.1-201ENST00000613012 531 ntBASIC4.12□□□□□ -1.75
CIITAP33076 AC025588.4-201ENST00000615802 908 ntBASIC4.12□□□□□ -1.75
CIITAP33076 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.12□□□□□ -1.75
CIITAP33076 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC4.12□□□□□ -1.75
CIITAP33076 AC112200.1-201ENST00000625015 234 ntBASIC4.12□□□□□ -1.75
CIITAP33076 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.12□□□□□ -1.75
CIITAP33076 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC4.12□□□□□ -1.75
CIITAP33076 AC138649.5-201ENST00000637456 137 ntBASIC4.12□□□□□ -1.75
CIITAP33076 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CIITAP33076 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CIITAP33076 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CIITAP33076 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
CIITAP33076 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CIITAP33076 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CIITAP33076 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CIITAP33076 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 NCAPGP1-201ENST00000505112 1814 ntBASIC4.11□□□□□ -1.75
CIITAP33076 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 AC007823.1-201ENST00000569932 1566 ntBASIC4.11□□□□□ -1.75
CIITAP33076 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 RNVU1-3-201ENST00000364313 161 ntBASIC4.11□□□□□ -1.75
CIITAP33076 SNORA48.7-201ENST00000391302 135 ntBASIC4.11□□□□□ -1.75
CIITAP33076 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC4.11□□□□□ -1.75
CIITAP33076 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC4.11□□□□□ -1.75
CIITAP33076 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 RPL21P32-201ENST00000419877 477 ntBASIC4.11□□□□□ -1.75
CIITAP33076 B3GALNT1P1-201ENST00000420569 975 ntBASIC4.11□□□□□ -1.75
CIITAP33076 FNDC3CP-201ENST00000420795 1155 ntBASIC4.11□□□□□ -1.75
CIITAP33076 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 C8orf59P1-201ENST00000429930 303 ntBASIC4.11□□□□□ -1.75
CIITAP33076 TCF7L1-IT1-201ENST00000433581 458 ntTSL 3 BASIC4.11□□□□□ -1.75
CIITAP33076 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC4.11□□□□□ -1.75
CIITAP33076 RPL37P21-201ENST00000435890 276 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AC005008.2-202ENST00000447776 439 ntTSL 3 BASIC4.11□□□□□ -1.75
CIITAP33076 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC4.11□□□□□ -1.75
CIITAP33076 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC4.11□□□□□ -1.75
CIITAP33076 AC093899.1-201ENST00000457984 376 ntBASIC4.11□□□□□ -1.75
CIITAP33076 GRM7-AS3-209ENST00000458713 454 ntTSL 3 BASIC4.11□□□□□ -1.75
CIITAP33076 RPL9P33-201ENST00000484311 566 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AC104619.4-201ENST00000510773 249 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.11□□□□□ -1.75
CIITAP33076 AC116347.2-201ENST00000514912 523 ntBASIC4.11□□□□□ -1.75
CIITAP33076 RNU6-579P-201ENST00000516879 102 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.11□□□□□ -1.75
CIITAP33076 HSPA8P13-201ENST00000523715 472 ntBASIC4.11□□□□□ -1.75
CIITAP33076 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.11□□□□□ -1.75
CIITAP33076 AC008127.2-201ENST00000549925 1075 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC4.11□□□□□ -1.75
CIITAP33076 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC4.11□□□□□ -1.75
CIITAP33076 MIR4644-201ENST00000579929 84 ntBASIC4.11□□□□□ -1.75
CIITAP33076 MIR4307-201ENST00000582802 84 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC4.11□□□□□ -1.75
CIITAP33076 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC4.11□□□□□ -1.75
CIITAP33076 AL589743.7-201ENST00000612637 233 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AC138932.5-201ENST00000617759 563 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AC095031.1-201ENST00000623685 672 ntBASIC4.11□□□□□ -1.75
CIITAP33076 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 AL034408.1-202ENST00000636088 415 ntBASIC4.11□□□□□ -1.75
CIITAP33076 CRYM-AS1-204ENST00000637983 556 ntBASIC4.11□□□□□ -1.75
CIITAP33076 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.11□□□□□ -1.75
CIITAP33076 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
CIITAP33076 AL022578.1-201ENST00000439330 1433 ntBASIC4.11□□□□□ -1.75
CIITAP33076 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC4.11□□□□□ -1.75
CIITAP33076 AC130650.2-201ENST00000618736 2403 ntBASIC4.11□□□□□ -1.75
CIITAP33076 AL359893.1-201ENST00000447628 1580 ntBASIC4.1□□□□□ -1.75
CIITAP33076 AC092447.7-201ENST00000422212 1621 ntBASIC4.1□□□□□ -1.75
CIITAP33076 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
CIITAP33076 AC006378.2-201ENST00000623178 2476 ntBASIC4.1□□□□□ -1.75
CIITAP33076 OR2B2-201ENST00000303324 1212 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
CIITAP33076 RNU6-289P-201ENST00000364093 107 ntBASIC4.1□□□□□ -1.75
CIITAP33076 RN7SKP266-201ENST00000410232 287 ntBASIC4.1□□□□□ -1.75
CIITAP33076 RN7SKP56-201ENST00000410513 331 ntBASIC4.1□□□□□ -1.75
CIITAP33076 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC4.1□□□□□ -1.75
CIITAP33076 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC4.1□□□□□ -1.75
CIITAP33076 AL356583.2-201ENST00000426536 280 ntBASIC4.1□□□□□ -1.75
CIITAP33076 AC091286.1-201ENST00000431233 461 ntBASIC4.1□□□□□ -1.75
CIITAP33076 RSU1P2-202ENST00000437884 485 ntBASIC4.1□□□□□ -1.75
CIITAP33076 HMGN2P21-201ENST00000447764 270 ntBASIC4.1□□□□□ -1.75
CIITAP33076 AC010655.1-201ENST00000449336 292 ntBASIC4.1□□□□□ -1.75
CIITAP33076 USP9YP34-201ENST00000453983 808 ntBASIC4.1□□□□□ -1.75
CIITAP33076 BTF3P5-201ENST00000457252 467 ntBASIC4.1□□□□□ -1.75
CIITAP33076 AC090453.1-201ENST00000495560 436 ntBASIC4.1□□□□□ -1.75
CIITAP33076 AC021678.1-201ENST00000505195 936 ntBASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms