Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.81□□□□□ -2.12
VCANP13611 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
VCANP13611 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
VCANP13611 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
VCANP13611 Y_RNA.115-201ENST00000363272 98 ntBASIC1.81□□□□□ -2.12
VCANP13611 TAS2R15P-201ENST00000390674 928 ntBASIC1.81□□□□□ -2.12
VCANP13611 AL138787.1-202ENST00000437804 898 ntBASIC1.81□□□□□ -2.12
VCANP13611 USP9YP15-201ENST00000442391 422 ntBASIC1.81□□□□□ -2.12
VCANP13611 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC1.81□□□□□ -2.12
VCANP13611 SULT1C2P1-202ENST00000562418 459 ntBASIC1.81□□□□□ -2.12
VCANP13611 AC080078.3-201ENST00000605407 463 ntBASIC1.81□□□□□ -2.12
VCANP13611 AC011472.4-201ENST00000615848 491 ntBASIC1.81□□□□□ -2.12
VCANP13611 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC1.8□□□□□ -2.12
VCANP13611 RNU1-42P-201ENST00000364033 160 ntBASIC1.8□□□□□ -2.12
VCANP13611 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
VCANP13611 SUMO2P6-201ENST00000505273 288 ntBASIC1.8□□□□□ -2.12
VCANP13611 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.8□□□□□ -2.12
VCANP13611 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
VCANP13611 OR4G11P-202ENST00000642116 1414 ntBASIC1.8□□□□□ -2.12
VCANP13611 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
VCANP13611 SNORA70.7-201ENST00000384159 133 ntBASIC1.8□□□□□ -2.12
VCANP13611 RPL21P18-201ENST00000469899 480 ntBASIC1.8□□□□□ -2.12
VCANP13611 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.8□□□□□ -2.12
VCANP13611 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.8□□□□□ -2.12
VCANP13611 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.8□□□□□ -2.12
VCANP13611 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC1.8□□□□□ -2.12
VCANP13611 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC1.79□□□□□ -2.12
VCANP13611 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC1.79□□□□□ -2.12
VCANP13611 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC1.79□□□□□ -2.12
VCANP13611 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC1.79□□□□□ -2.12
VCANP13611 AC068135.2-201ENST00000569293 1028 ntBASIC1.79□□□□□ -2.12
VCANP13611 NF1P5-201ENST00000588287 448 ntBASIC1.79□□□□□ -2.12
VCANP13611 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC1.79□□□□□ -2.12
VCANP13611 AC016727.2-201ENST00000603988 621 ntBASIC1.79□□□□□ -2.12
VCANP13611 AC022513.1-201ENST00000624512 117 ntBASIC1.79□□□□□ -2.12
VCANP13611 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC1.79□□□□□ -2.12
VCANP13611 AC097634.1-201ENST00000604491 2467 ntBASIC1.79□□□□□ -2.12
VCANP13611 SNORD114-27-201ENST00000363766 70 ntBASIC1.79□□□□□ -2.12
VCANP13611 AC098934.3-201ENST00000430450 190 ntBASIC1.79□□□□□ -2.12
VCANP13611 RPL23AP20-201ENST00000447965 421 ntBASIC1.79□□□□□ -2.12
VCANP13611 AP000907.2-201ENST00000530827 353 ntBASIC1.79□□□□□ -2.12
VCANP13611 AC079584.2-201ENST00000548756 515 ntTSL 3 BASIC1.79□□□□□ -2.12
VCANP13611 AC096772.1-201ENST00000609146 564 ntBASIC1.79□□□□□ -2.12
VCANP13611 VN1R7P-201ENST00000619242 903 ntBASIC1.79□□□□□ -2.12
VCANP13611 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC1.79□□□□□ -2.12
VCANP13611 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
VCANP13611 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC1.79□□□□□ -2.12
VCANP13611 CBX3P5-201ENST00000552017 521 ntBASIC1.79□□□□□ -2.12
VCANP13611 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
VCANP13611 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
VCANP13611 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC1.79□□□□□ -2.12
VCANP13611 XPOTP1-201ENST00000443317 2398 ntBASIC1.78□□□□□ -2.12
VCANP13611 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
VCANP13611 ANKRD18EP-201ENST00000405487 2632 ntBASIC1.78□□□□□ -2.12
VCANP13611 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
VCANP13611 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC1.78□□□□□ -2.12
VCANP13611 AC024560.3-201ENST00000608482 349 ntBASIC1.78□□□□□ -2.12
VCANP13611 AL157834.3-201ENST00000615543 103 ntBASIC1.78□□□□□ -2.12
VCANP13611 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.78□□□□□ -2.12
VCANP13611 LRRC77P-213ENST00000637727 880 ntBASIC1.78□□□□□ -2.12
VCANP13611 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
VCANP13611 U3.37-201ENST00000408528 213 ntBASIC1.78□□□□□ -2.12
VCANP13611 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC1.78□□□□□ -2.12
VCANP13611 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.78□□□□□ -2.12
VCANP13611 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
VCANP13611 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC1.78□□□□□ -2.12
VCANP13611 RNU7-170P-201ENST00000459303 61 ntBASIC1.78□□□□□ -2.12
VCANP13611 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.78□□□□□ -2.12
VCANP13611 RPPH1-2P-201ENST00000516688 293 ntBASIC1.78□□□□□ -2.12
VCANP13611 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.78□□□□□ -2.12
VCANP13611 TOMM22P1-201ENST00000418578 312 ntBASIC1.78□□□□□ -2.13
VCANP13611 AL365400.1-201ENST00000431854 640 ntBASIC1.78□□□□□ -2.13
VCANP13611 USP9YP10-201ENST00000454868 628 ntBASIC1.78□□□□□ -2.13
VCANP13611 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC1.78□□□□□ -2.13
VCANP13611 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC1.78□□□□□ -2.13
VCANP13611 SNORD53B-201ENST00000577887 78 ntBASIC1.78□□□□□ -2.13
VCANP13611 U73479.1-201ENST00000618062 168 ntBASIC1.78□□□□□ -2.13
VCANP13611 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
VCANP13611 UBE2L2-201ENST00000254302 429 ntBASIC1.77□□□□□ -2.13
VCANP13611 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
VCANP13611 VTRNA1-3-201ENST00000365645 89 ntBASIC1.77□□□□□ -2.13
VCANP13611 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.77□□□□□ -2.13
VCANP13611 CREM-226ENST00000469949 721 ntTSL 3 BASIC1.77□□□□□ -2.13
VCANP13611 TPMTP1-201ENST00000592307 737 ntBASIC1.77□□□□□ -2.13
VCANP13611 AC012119.1-201ENST00000603184 222 ntBASIC1.77□□□□□ -2.13
VCANP13611 AC009314.1-201ENST00000603871 304 ntBASIC1.77□□□□□ -2.13
VCANP13611 AC009541.1-201ENST00000438279 2662 ntBASIC1.77□□□□□ -2.13
VCANP13611 Y_RNA.471-201ENST00000384312 102 ntBASIC1.77□□□□□ -2.13
VCANP13611 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC1.77□□□□□ -2.13
VCANP13611 AC096992.1-201ENST00000459808 709 ntBASIC1.77□□□□□ -2.13
VCANP13611 AC107393.1-201ENST00000512403 346 ntBASIC1.77□□□□□ -2.13
VCANP13611 AC023825.1-201ENST00000566704 1030 ntBASIC1.77□□□□□ -2.13
VCANP13611 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.77□□□□□ -2.13
VCANP13611 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
VCANP13611 AC240504.1-201ENST00000395709 845 ntBASIC1.76□□□□□ -2.13
VCANP13611 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC1.76□□□□□ -2.13
VCANP13611 MTCYBP12-201ENST00000440559 1134 ntBASIC1.76□□□□□ -2.13
VCANP13611 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.76□□□□□ -2.13
VCANP13611 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
VCANP13611 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms