Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AC008481.1-201ENST00000463278 396 ntBASIC2.03□□□□□ -2.08
TNFP01375 AC072039.1-201ENST00000477611 581 ntBASIC2.03□□□□□ -2.08
TNFP01375 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC2.03□□□□□ -2.08
TNFP01375 AC106872.3-201ENST00000495104 446 ntBASIC2.03□□□□□ -2.08
TNFP01375 HMGB1P22-201ENST00000505315 124 ntBASIC2.03□□□□□ -2.08
TNFP01375 MTND3P24-201ENST00000506306 329 ntBASIC2.03□□□□□ -2.08
TNFP01375 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC2.03□□□□□ -2.08
TNFP01375 ERHP1-201ENST00000523006 310 ntBASIC2.03□□□□□ -2.08
TNFP01375 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC2.03□□□□□ -2.08
TNFP01375 MYL12BP1-201ENST00000569826 507 ntBASIC2.03□□□□□ -2.08
TNFP01375 AC245036.5-201ENST00000596330 847 ntBASIC2.03□□□□□ -2.08
TNFP01375 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC2.03□□□□□ -2.08
TNFP01375 AC013562.2-201ENST00000611632 603 ntBASIC2.03□□□□□ -2.08
TNFP01375 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
TNFP01375 AC099654.7-201ENST00000635788 2127 ntBASIC2.03□□□□□ -2.08
TNFP01375 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.03□□□□□ -2.08
TNFP01375 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
TNFP01375 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.09
TNFP01375 PABPC1P7-201ENST00000413177 1513 ntBASIC2.02□□□□□ -2.09
TNFP01375 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
TNFP01375 AC002543.1-201ENST00000299783 1954 ntBASIC2.02□□□□□ -2.09
TNFP01375 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
TNFP01375 RNA5SP139-201ENST00000364340 117 ntBASIC2.02□□□□□ -2.09
TNFP01375 SNORA67.1-201ENST00000364749 141 ntBASIC2.02□□□□□ -2.09
TNFP01375 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
TNFP01375 RNU6-629P-201ENST00000384061 103 ntBASIC2.02□□□□□ -2.09
TNFP01375 MIR144-201ENST00000384886 86 ntBASIC2.02□□□□□ -2.09
TNFP01375 MIR627-201ENST00000384979 97 ntBASIC2.02□□□□□ -2.09
TNFP01375 AC019129.1-201ENST00000403786 261 ntBASIC2.02□□□□□ -2.09
TNFP01375 HMGB1P11-201ENST00000413899 637 ntBASIC2.02□□□□□ -2.09
TNFP01375 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFP01375 NUP35P2-201ENST00000416748 943 ntBASIC2.02□□□□□ -2.09
TNFP01375 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFP01375 TRIM60P8Y-201ENST00000436338 762 ntBASIC2.02□□□□□ -2.09
TNFP01375 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC2.02□□□□□ -2.09
TNFP01375 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFP01375 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFP01375 RPS24P6-201ENST00000452670 400 ntBASIC2.02□□□□□ -2.09
TNFP01375 AP002345.1-201ENST00000456493 928 ntBASIC2.02□□□□□ -2.09
TNFP01375 AL031183.1-201ENST00000457667 207 ntBASIC2.02□□□□□ -2.09
TNFP01375 RPL23AP42-201ENST00000471152 471 ntBASIC2.02□□□□□ -2.09
TNFP01375 RNU1-104P-201ENST00000517280 175 ntBASIC2.02□□□□□ -2.09
TNFP01375 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.02□□□□□ -2.09
TNFP01375 AP003385.6-201ENST00000531603 374 ntBASIC2.02□□□□□ -2.09
TNFP01375 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC2.02□□□□□ -2.09
TNFP01375 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFP01375 ACTR3BP3-201ENST00000565577 979 ntBASIC2.02□□□□□ -2.09
TNFP01375 COX6CP3-201ENST00000580869 223 ntBASIC2.02□□□□□ -2.09
TNFP01375 MIR4524B-201ENST00000581569 115 ntBASIC2.02□□□□□ -2.09
TNFP01375 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC2.02□□□□□ -2.09
TNFP01375 VN1R78P-201ENST00000597393 564 ntBASIC2.02□□□□□ -2.09
TNFP01375 AC120053.1-201ENST00000607706 736 ntBASIC2.02□□□□□ -2.09
TNFP01375 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.02□□□□□ -2.09
TNFP01375 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.02□□□□□ -2.09
TNFP01375 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC2.02□□□□□ -2.09
TNFP01375 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.02□□□□□ -2.09
TNFP01375 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC2.02□□□□□ -2.09
TNFP01375 ZNF355P-201ENST00000427301 3216 ntBASIC2.01□□□□□ -2.09
TNFP01375 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.01□□□□□ -2.09
TNFP01375 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
TNFP01375 TANK-204ENST00000403609 555 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
TNFP01375 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.01□□□□□ -2.09
TNFP01375 AL606495.1-201ENST00000422100 813 ntBASIC2.01□□□□□ -2.09
TNFP01375 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC2.01□□□□□ -2.09
TNFP01375 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC2.01□□□□□ -2.09
TNFP01375 AC090543.1-201ENST00000492168 485 ntBASIC2.01□□□□□ -2.09
TNFP01375 CDC42P4-201ENST00000510507 563 ntBASIC2.01□□□□□ -2.09
TNFP01375 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC2.01□□□□□ -2.09
TNFP01375 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC2.01□□□□□ -2.09
TNFP01375 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.01□□□□□ -2.09
TNFP01375 AC087808.1-201ENST00000520501 361 ntBASIC2.01□□□□□ -2.09
TNFP01375 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC2.01□□□□□ -2.09
TNFP01375 MTND4LP24-201ENST00000572277 291 ntBASIC2.01□□□□□ -2.09
TNFP01375 Y_RNA.783-201ENST00000613546 102 ntBASIC2.01□□□□□ -2.09
TNFP01375 AC006963.1-201ENST00000624003 1052 ntBASIC2.01□□□□□ -2.09
TNFP01375 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.01□□□□□ -2.09
TNFP01375 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
TNFP01375 AC135776.4-201ENST00000624300 1904 ntBASIC2.01□□□□□ -2.09
TNFP01375 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.01□□□□□ -2.09
TNFP01375 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.01□□□□□ -2.09
TNFP01375 IVNS1ABP-201ENST00000367497 746 ntTSL 5 BASIC2□□□□□ -2.09
TNFP01375 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC2□□□□□ -2.09
TNFP01375 USP9YP27-201ENST00000418455 438 ntBASIC2□□□□□ -2.09
TNFP01375 MTCYBP24-201ENST00000420387 1106 ntBASIC2□□□□□ -2.09
TNFP01375 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2□□□□□ -2.09
TNFP01375 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2□□□□□ -2.09
TNFP01375 AC010285.1-201ENST00000470580 392 ntBASIC2□□□□□ -2.09
TNFP01375 AC104435.1-201ENST00000483483 166 ntBASIC2□□□□□ -2.09
TNFP01375 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC2□□□□□ -2.09
TNFP01375 AC116337.1-201ENST00000509680 687 ntBASIC2□□□□□ -2.09
TNFP01375 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC2□□□□□ -2.09
TNFP01375 RAC1P5-201ENST00000512182 576 ntBASIC2□□□□□ -2.09
TNFP01375 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC2□□□□□ -2.09
TNFP01375 DEFB122-202ENST00000569013 197 ntBASIC2□□□□□ -2.09
TNFP01375 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC2□□□□□ -2.09
TNFP01375 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC2□□□□□ -2.09
TNFP01375 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2□□□□□ -2.09
TNFP01375 AC020923.1-201ENST00000624021 917 ntBASIC2□□□□□ -2.09
TNFP01375 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC2□□□□□ -2.09
TNFP01375 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms