Protein–RNA interactions for Protein: Q9QZR9

Col4a4, Collagen alpha-4(IV) chain, mousemouse

Predictions only

Length 1,682 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a4Q9QZR9 Gm18489-201ENSMUST00000172565 551 ntBASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Snapc2-203ENSMUST00000208316 1190 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 AC125206.2-201ENSMUST00000217454 574 ntBASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Col4a4Q9QZR9 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Gm10253-201ENSMUST00000194270 940 ntBASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Gm26515-201ENSMUST00000181141 996 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Col4a4Q9QZR9 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Psmc5-201ENSMUST00000021049 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Rpph1-201ENSMUST00000175096 319 ntBASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Gm18246-201ENSMUST00000221023 728 ntBASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Col4a4Q9QZR9 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 AC158538.2-201ENSMUST00000225455 906 ntBASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Col4a4Q9QZR9 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Gm2423-201ENSMUST00000074863 733 ntBASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Col4a4Q9QZR9 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Gm13223-201ENSMUST00000118609 747 ntBASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Gm20553-201ENSMUST00000204205 844 ntBASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 AC124732.2-201ENSMUST00000221977 316 ntBASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.27■□□□□ 0.19
Col4a4Q9QZR9 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col4a4Q9QZR9 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col4a4Q9QZR9 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Col4a4Q9QZR9 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.26■□□□□ 0.19
Col4a4Q9QZR9 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms