Protein–RNA interactions for Protein: Q9CR29

Ccdc43, Coiled-coil domain-containing protein 43, mousemouse

Known RBP Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc43Q9CR29 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc43Q9CR29 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc43Q9CR29 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc43Q9CR29 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc43Q9CR29 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Ccdc43Q9CR29 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Gm13559-201ENSMUST00000120476 863 ntBASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Gm7889-201ENSMUST00000185591 958 ntBASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Gm43799-201ENSMUST00000201845 579 ntBASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Ccdc43Q9CR29 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Col2a1-201ENSMUST00000023123 5104 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Tsnax-201ENSMUST00000075896 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 B3gnt6-201ENSMUST00000098278 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Gm15565-201ENSMUST00000118890 427 ntBASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Gm7370-201ENSMUST00000219471 767 ntBASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Ccnyl1-202ENSMUST00000114077 3281 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Ccdc43Q9CR29 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Mir5130-201ENSMUST00000175160 84 ntBASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Gm18959-201ENSMUST00000208954 655 ntBASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Gm6190-201ENSMUST00000220683 1374 ntBASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Ccdc43Q9CR29 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Dancr-204ENSMUST00000132389 2347 ntBASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Gm45203-201ENSMUST00000206384 1831 ntBASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Ccdc43Q9CR29 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms