Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ushbp1Q8R370 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Znhit2-201ENSMUST00000162726 1281 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Mzt1-203ENSMUST00000227948 952 ntBASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Ushbp1Q8R370 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Gm27357-201ENSMUST00000183754 135 ntBASIC18.27■□□□□ 0.52
Ushbp1Q8R370 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Spr-ps1-201ENSMUST00000089584 605 ntBASIC18.27■□□□□ 0.52
Ushbp1Q8R370 AC115863.1-201ENSMUST00000214815 1813 ntBASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Ushbp1Q8R370 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
Ushbp1Q8R370 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Ushbp1Q8R370 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Trim8-201ENSMUST00000026008 3230 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Gm26917-202ENSMUST00000192833 3329 ntBASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Mir770-201ENSMUST00000103252 94 ntBASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Gm11336-201ENSMUST00000118168 334 ntBASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Gm18421-201ENSMUST00000204122 625 ntBASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Idnk-201ENSMUST00000051490 764 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ushbp1Q8R370 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Cdh2-201ENSMUST00000025166 4843 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Faap20-210ENSMUST00000178473 1076 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ushbp1Q8R370 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ushbp1Q8R370 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC18.24■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms