Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC14.09□□□□□ -0.15
Nkx3-1P97436 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.09□□□□□ -0.15
Nkx3-1P97436 AC107711.5-202ENSMUST00000226429 702 ntBASIC14.09□□□□□ -0.15
Nkx3-1P97436 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.09□□□□□ -0.15
Nkx3-1P97436 Ube2f-201ENSMUST00000059743 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC14.09□□□□□ -0.15
Nkx3-1P97436 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
Nkx3-1P97436 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
Nkx3-1P97436 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Nkx3-1P97436 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Nkx3-1P97436 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Nkx3-1P97436 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Nkx3-1P97436 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
Nkx3-1P97436 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
Nkx3-1P97436 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Nkx3-1P97436 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC14.08□□□□□ -0.16
Nkx3-1P97436 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC14.08□□□□□ -0.16
Nkx3-1P97436 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Cdca7-201ENSMUST00000102691 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC14.08□□□□□ -0.16
Nkx3-1P97436 Gm25745-201ENSMUST00000174945 133 ntBASIC14.08□□□□□ -0.16
Nkx3-1P97436 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Zfp24-203ENSMUST00000153337 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Gm43548-201ENSMUST00000197139 2353 ntBASIC14.08□□□□□ -0.16
Nkx3-1P97436 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
Nkx3-1P97436 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Nkx3-1P97436 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Gm10060-201ENSMUST00000212002 111 ntBASIC14.07□□□□□ -0.16
Nkx3-1P97436 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.07□□□□□ -0.16
Nkx3-1P97436 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Nkx3-1P97436 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Gm37519-201ENSMUST00000191687 2210 ntBASIC14.06□□□□□ -0.16
Nkx3-1P97436 Stam-202ENSMUST00000102960 5000 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Gm1401-201ENSMUST00000122048 772 ntBASIC14.06□□□□□ -0.16
Nkx3-1P97436 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC14.06□□□□□ -0.16
Nkx3-1P97436 AC127349.1-201ENSMUST00000224590 266 ntBASIC14.06□□□□□ -0.16
Nkx3-1P97436 Vti1a-206ENSMUST00000225529 1244 ntBASIC14.06□□□□□ -0.16
Nkx3-1P97436 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Nkx3-1P97436 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms