Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Tpm1P58771 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Tpm1P58771 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.28■□□□□ 0.52
Tpm1P58771 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Tpm1P58771 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC18.28■□□□□ 0.52
Tpm1P58771 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Tpm1P58771 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Tpm1P58771 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Tpm1P58771 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Tpm1P58771 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Tpm1P58771 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Tpm1P58771 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Tpm1P58771 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Tpm1P58771 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC18.27■□□□□ 0.52
Tpm1P58771 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
Tpm1P58771 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Tpm1P58771 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC18.27■□□□□ 0.51
Tpm1P58771 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Tpm1P58771 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Tpm1P58771 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
Tpm1P58771 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Tpm1P58771 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Cog8-201ENSMUST00000034391 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.26■□□□□ 0.51
Tpm1P58771 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Gm14026-201ENSMUST00000120625 1789 ntBASIC18.26■□□□□ 0.51
Tpm1P58771 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.26■□□□□ 0.51
Tpm1P58771 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Rffl-206ENSMUST00000108173 3489 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Spout1-201ENSMUST00000100220 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Tpm1P58771 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Tpm1P58771 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC18.25■□□□□ 0.51
Tpm1P58771 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.25■□□□□ 0.51
Tpm1P58771 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
Tpm1P58771 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC18.25■□□□□ 0.51
Tpm1P58771 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Lrrc32-203ENSMUST00000205956 4576 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Tpm1P58771 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC18.25■□□□□ 0.51
Tpm1P58771 Asic4-202ENSMUST00000113577 2667 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
Tpm1P58771 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Tpm1P58771 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Tbc1d8-201ENSMUST00000054462 4451 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Tpm1P58771 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Gm27275-201ENSMUST00000184318 272 ntBASIC18.24■□□□□ 0.51
Tpm1P58771 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.24■□□□□ 0.51
Tpm1P58771 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Tpm1P58771 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC18.24■□□□□ 0.51
Tpm1P58771 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Taf5l-201ENSMUST00000093039 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Tpm1P58771 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms