Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Rfx3P48381 Chd3-201ENSMUST00000092971 6066 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Rfx3P48381 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.04
Rfx3P48381 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Rfx3P48381 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Rfx3P48381 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
Rfx3P48381 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Gm43353-201ENSMUST00000199224 1295 ntBASIC14.77□□□□□ -0.05
Rfx3P48381 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC14.77□□□□□ -0.05
Rfx3P48381 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Gm5417-201ENSMUST00000079706 384 ntBASIC14.77□□□□□ -0.05
Rfx3P48381 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.77□□□□□ -0.05
Rfx3P48381 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Nr2e1-201ENSMUST00000019938 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Gm16011-201ENSMUST00000121567 2662 ntBASIC14.77□□□□□ -0.05
Rfx3P48381 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Rfx3P48381 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC14.76□□□□□ -0.05
Rfx3P48381 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC14.76□□□□□ -0.05
Rfx3P48381 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Rfx3P48381 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Rfx3P48381 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Rfx3P48381 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC14.75□□□□□ -0.05
Rfx3P48381 Chrm3-202ENSMUST00000187510 4336 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Gabrb3-201ENSMUST00000039697 5579 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Tmem183a-201ENSMUST00000049470 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Gm43072-201ENSMUST00000200283 1671 ntBASIC14.75□□□□□ -0.05
Rfx3P48381 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
Rfx3P48381 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC14.75□□□□□ -0.05
Rfx3P48381 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC14.75□□□□□ -0.05
Rfx3P48381 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC14.75□□□□□ -0.05
Rfx3P48381 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Slbp-203ENSMUST00000101354 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
Rfx3P48381 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Rfx3P48381 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
Rfx3P48381 Bcap29-201ENSMUST00000020979 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC14.74□□□□□ -0.05
Rfx3P48381 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.74□□□□□ -0.05
Rfx3P48381 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC14.74□□□□□ -0.05
Rfx3P48381 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC14.74□□□□□ -0.05
Rfx3P48381 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC14.74□□□□□ -0.05
Rfx3P48381 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC14.74□□□□□ -0.05
Rfx3P48381 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
Rfx3P48381 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Rfx3P48381 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Rfx3P48381 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC14.73□□□□□ -0.05
Rfx3P48381 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.73□□□□□ -0.05
Rfx3P48381 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
Rfx3P48381 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC14.73□□□□□ -0.05
Rfx3P48381 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Rfx3P48381 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms