Protein–RNA interactions for Protein: P02831

Hoxa3, Homeobox protein Hox-A3, mousemouse

Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa3P02831 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Hoxa3P02831 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Hoxa3P02831 Zkscan3-208ENSMUST00000224820 5398 ntBASIC13.68□□□□□ -0.22
Hoxa3P02831 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Hoxa3P02831 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC13.68□□□□□ -0.22
Hoxa3P02831 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Ighv6-1-201ENSMUST00000193612 343 ntBASIC13.68□□□□□ -0.22
Hoxa3P02831 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
Hoxa3P02831 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
Hoxa3P02831 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC13.68□□□□□ -0.22
Hoxa3P02831 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Hoxa3P02831 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Hoxa3P02831 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Hoxa3P02831 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
Hoxa3P02831 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Hoxa3P02831 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Hoxa3P02831 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC13.66□□□□□ -0.22
Hoxa3P02831 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC13.66□□□□□ -0.22
Hoxa3P02831 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC13.66□□□□□ -0.22
Hoxa3P02831 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Gm18421-201ENSMUST00000204122 625 ntBASIC13.66□□□□□ -0.22
Hoxa3P02831 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Hoxa3P02831 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Gm45203-201ENSMUST00000206384 1831 ntBASIC13.66□□□□□ -0.22
Hoxa3P02831 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC13.66□□□□□ -0.22
Hoxa3P02831 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC13.66□□□□□ -0.22
Hoxa3P02831 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Hoxa3P02831 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
Hoxa3P02831 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC13.66□□□□□ -0.22
Hoxa3P02831 Dancr-204ENSMUST00000132389 2347 ntBASIC13.65□□□□□ -0.22
Hoxa3P02831 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxa3P02831 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxa3P02831 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxa3P02831 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxa3P02831 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxa3P02831 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxa3P02831 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxa3P02831 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Hoxa3P02831 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 32 ms