Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AL359273.1-201ENST00000510918 627 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 FAM60DP-201ENST00000524174 632 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 RPL23AP84-201ENST00000571193 464 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 MIR3921-201ENST00000577308 85 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 MIR4293-201ENST00000584305 78 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 AL356130.2-201ENST00000612554 404 ntTSL 3 BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC9Q9Y3X0 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC5.9□□□□□ -1.47
CCDC9Q9Y3X0 MTND5P26-201ENST00000426018 1752 ntBASIC5.9□□□□□ -1.47
CCDC9Q9Y3X0 SDAD1P2-201ENST00000441308 2028 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 RNU6-1284P-201ENST00000363701 100 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 STAP1-202ENST00000396225 1146 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC108032.1-201ENST00000416706 207 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 ZNF885P-201ENST00000420174 1098 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 CYCSP43-201ENST00000438233 310 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC012671.1-201ENST00000451912 203 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 MTND2P24-201ENST00000453434 806 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 RPS27AP1-201ENST00000475545 471 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 TRMT10BP1-201ENST00000519377 943 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 IGKV2D-19-201ENST00000523346 262 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC022616.3-201ENST00000523940 148 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC093012.1-202ENST00000549403 582 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC006349.1-201ENST00000555526 235 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 HSPE1P5-201ENST00000561489 272 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC127024.5-201ENST00000580085 462 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 SDR42E1P2-201ENST00000614861 481 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC084757.4-201ENST00000616350 526 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC012314.7-201ENST00000619693 93 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 LRRC77P-213ENST00000637727 880 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 AC116667.1-201ENST00000604855 2072 ntBASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC5.89□□□□□ -1.47
CCDC9Q9Y3X0 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 RNU1-39P-201ENST00000383897 165 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 HSPE1P26-201ENST00000405341 275 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 MIR1290-201ENST00000408735 78 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AL139095.3-201ENST00000419672 1203 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 COX6B1P7-201ENST00000430845 235 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 HMGB1P12-201ENST00000438594 598 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC079448.1-201ENST00000449377 373 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC133473.1-201ENST00000455173 299 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC010631.1-201ENST00000474150 156 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC107401.1-201ENST00000503426 685 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC105031.1-201ENST00000518550 476 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC087477.6-201ENST00000559595 843 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AL845331.3-202ENST00000562856 261 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 MIR5685-201ENST00000579080 79 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 MIR3167-201ENST00000579623 85 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AL606834.2-201ENST00000602954 668 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AL606490.9-201ENST00000603331 271 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 SRGNP1-201ENST00000603392 451 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC103710.2-201ENST00000609912 942 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC013562.2-201ENST00000611632 603 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC010133.1-201ENST00000615809 842 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AL158196.1-201ENST00000616786 434 ntBASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 TEX41-300ENST00000631048 69 ntTSL 5 BASIC5.88□□□□□ -1.47
CCDC9Q9Y3X0 AC055839.1-201ENST00000634467 498 ntBASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 96.1 ms