Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC111000.2-201ENST00000507775 550 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AP003461.1-201ENST00000528866 78 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC013828.2-201ENST00000532487 235 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 CCDC179-202ENST00000532798 791 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 CCNG2P1-201ENST00000549521 1000 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AL121576.1-201ENST00000556055 276 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC090888.2-201ENST00000559765 1144 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC006960.3-201ENST00000561845 705 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 FOPNL-204ENST00000573396 735 ntTSL 3 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 MIR3609-201ENST00000582661 80 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 TTN-AS1-212ENST00000582847 1036 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC006116.10-201ENST00000591836 581 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 KLKP1-201ENST00000595979 403 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC068313.1-201ENST00000604028 1008 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC005344.1-201ENST00000613391 459 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC090132.2-201ENST00000615881 347 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC110774.1-201ENST00000623567 2018 ntBASIC3.03□□□□□ -1.92
FOXA2Q9Y261 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.03□□□□□ -1.92
FOXA2Q9Y261 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RPS4XP5-202ENST00000449995 1334 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RNU6-223P-201ENST00000362830 107 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RNU6-433P-201ENST00000363216 104 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RNA5SP515-201ENST00000364570 118 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RNA5SP479-201ENST00000364858 117 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RNA5SP424-201ENST00000390988 115 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RNA5SP252-201ENST00000391131 119 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL590084.2-201ENST00000401481 382 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL391417.1-201ENST00000404100 426 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 SNORA3.3-201ENST00000408712 125 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL359704.1-201ENST00000411586 781 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RPS3AP25-201ENST00000411660 793 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 HMGB1P11-201ENST00000413899 637 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC009237.5-201ENST00000414271 501 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 XKRYP1-201ENST00000423438 492 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 XKRYP2-201ENST00000432915 492 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 TAAR7P-201ENST00000436141 242 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 YWHAZP7-201ENST00000436906 631 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 RPS29P7-201ENST00000439662 171 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 FAM103A2P-201ENST00000444122 354 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC099563.1-201ENST00000456086 418 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC104472.2-201ENST00000469035 601 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC135721.1-201ENST00000497954 479 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 KCTD9P5-201ENST00000504141 1170 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC112198.1-201ENST00000505369 1220 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 PCBP2P3-201ENST00000509726 843 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 SNORA3.4-201ENST00000515969 96 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 IGHV3-76-201ENST00000522465 295 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 OR5G4P-201ENST00000525251 760 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AP000867.2-201ENST00000532468 320 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 OR4H12P-201ENST00000556269 907 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 MIR4760-201ENST00000585040 80 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 TPMTP1-201ENST00000592307 737 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL133393.1-201ENST00000603277 287 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL139344.1-201ENST00000605228 195 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 SNORA62.6-201ENST00000606322 83 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC103710.4-201ENST00000609301 899 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL354798.1-201ENST00000622505 329 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 OR5H6-203ENST00000642105 978 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AL138713.1-201ENST00000624026 2130 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AP004289.2-201ENST00000444413 1457 ntBASIC3.02□□□□□ -1.93
FOXA2Q9Y261 AC233263.6-201ENST00000631132 1963 ntBASIC3.01□□□□□ -1.93
FOXA2Q9Y261 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
FOXA2Q9Y261 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
FOXA2Q9Y261 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
FOXA2Q9Y261 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.01□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 128.2 ms