Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC112187.2-201ENST00000604345 283 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 BCRP9-201ENST00000605312 388 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AL391261.4-201ENST00000616012 481 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 MIR7844-201ENST00000616161 122 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AL590240.3-201ENST00000621416 943 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC127502.3-201ENST00000636170 1206 ntBASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC3.82□□□□□ -1.8
LIMA1Q9UHB6 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC006378.2-201ENST00000623178 2476 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 RNU6-882P-201ENST00000391025 103 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 SKINT1L-201ENST00000401057 817 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AL031577.2-201ENST00000404133 280 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 RNU2-37P-201ENST00000410695 177 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 RNU6-920P-201ENST00000410926 92 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 RAB28P1-201ENST00000411517 641 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 ATP5A1P2-201ENST00000412323 255 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AL159169.1-201ENST00000421119 127 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 RPL23AP82-202ENST00000427528 469 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AL512649.1-201ENST00000428997 581 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC108734.1-201ENST00000439549 399 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 RPS29P7-201ENST00000439662 171 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC097262.1-201ENST00000452559 548 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 CENPBD1P1-201ENST00000464061 469 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 RPL23AP14-201ENST00000468281 468 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 MLLT10P2-201ENST00000506434 249 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC118465.1-201ENST00000513820 1271 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 MTCO1P47-201ENST00000523889 1271 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 WISP1-OT1-201ENST00000602893 642 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC097065.2-201ENST00000608159 533 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC092653.1-201ENST00000608509 531 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 U4.6-201ENST00000621618 127 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 OTUD4P1-201ENST00000237841 3067 ntBASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
LIMA1Q9UHB6 AC032011.1-201ENST00000611703 1549 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL445523.1-201ENST00000451184 1362 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 CRP-203ENST00000368111 512 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC025750.1-201ENST00000399891 379 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 RNU2-71P-201ENST00000411395 189 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 CCDC58P2-201ENST00000417131 366 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 LARP1BP3-201ENST00000437229 869 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL121871.1-201ENST00000443413 436 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC112653.1-201ENST00000443851 386 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 RN7SL442P-201ENST00000473804 320 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 RPS3AP43-201ENST00000479743 781 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 RPS4XP22-201ENST00000480755 780 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 RPL7P47-201ENST00000497299 556 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC087373.1-201ENST00000524920 491 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 SNRPGP16-201ENST00000533275 226 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC007224.1-201ENST00000564410 144 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC136624.4-201ENST00000573044 370 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 FAM60BP-201ENST00000578364 658 ntBASIC3.8□□□□□ -1.8
LIMA1Q9UHB6 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms