Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 RNU1-95P-201ENST00000516357 160 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 RNU5A-4P-201ENST00000516588 111 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 RNU1-128P-201ENST00000516704 160 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 RN7SKP282-201ENST00000516824 299 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 RNU6-711P-201ENST00000517255 106 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC026403.1-201ENST00000518938 295 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 COX6CP8-201ENST00000522620 226 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC023050.2-201ENST00000544968 387 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC023161.2-201ENST00000551218 780 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC061975.8-201ENST00000587058 721 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AC112220.3-201ENST00000605502 502 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 ZNF876P-202ENST00000398732 1485 ntBASIC3.19□□□□□ -1.9
DDX28Q9NUL7 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.19□□□□□ -1.9
DDX28Q9NUL7 AL356274.2-201ENST00000624379 3752 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AF117829.1-206ENST00000621883 3802 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC007656.2-201ENST00000624902 4547 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 FAM133CP-201ENST00000332869 704 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 RNA5SP124-201ENST00000362739 110 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 RNU6-157P-201ENST00000383957 107 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 MIR135A2-201ENST00000384854 100 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 RNU6-757P-201ENST00000410334 100 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 RPS15AP38-201ENST00000413110 372 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC093578.1-201ENST00000415219 368 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 GRM7-AS3-202ENST00000417482 454 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 SDCBPP3-201ENST00000419629 891 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 RABEPKP1-201ENST00000440529 1026 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC002381.1-201ENST00000447049 280 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 RPL36AP33-201ENST00000450395 310 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC106821.1-201ENST00000502861 572 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC091951.3-201ENST00000504093 246 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC006499.5-201ENST00000505037 514 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 LINC02201-201ENST00000508992 468 ntTSL 2 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 MEF2C-AS1-212ENST00000514158 713 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC093677.1-201ENST00000514414 678 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC110760.3-202ENST00000515177 371 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC239860.2-201ENST00000525886 270 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 OR6C7P-201ENST00000547875 934 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 LINC02300-201ENST00000549742 665 ntTSL 4 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 LINC02109-204ENST00000602801 563 ntTSL 4 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 BBIP1P1-201ENST00000602999 279 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 ACTR3BP1-201ENST00000605584 1247 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC092106.3-201ENST00000611308 722 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AL110115.1-201ENST00000614396 364 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 AC009093.8-201ENST00000641769 292 ntBASIC3.18□□□□□ -1.9
DDX28Q9NUL7 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
DDX28Q9NUL7 HTR2B-201ENST00000258400 2246 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 SNORD56.3-201ENST00000363507 71 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 RNA5SP72-201ENST00000364442 117 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 RNU6-343P-201ENST00000364709 104 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 RNU4-28P-201ENST00000364739 141 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 MIR34B-201ENST00000385076 84 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 RNU6-882P-201ENST00000391025 103 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 RPL7P60-201ENST00000397636 735 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 U3.39-201ENST00000408569 239 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 NDUFB4P5-201ENST00000415445 361 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AL355989.1-202ENST00000419406 408 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 SNRPEP7-201ENST00000438350 220 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 MTCYBP34-201ENST00000439552 670 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC104978.1-201ENST00000449387 391 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 snoU13.8-201ENST00000458890 104 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 MEMO1P3-201ENST00000459811 302 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC025465.2-201ENST00000502809 608 ntTSL 2 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 RANP9-201ENST00000519957 271 ntBASIC3.17□□□□□ -1.9
DDX28Q9NUL7 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.17□□□□□ -1.9
DDX28Q9NUL7 AC103783.1-201ENST00000520506 373 ntBASIC3.17□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms