Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 MTND5P30-201ENST00000452896 1731 ntBASIC4.31□□□□□ -1.72
CCDC140Q96MF4 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 CD86-204ENST00000469710 1604 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
CCDC140Q96MF4 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 NCAPGP1-201ENST00000505112 1814 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AC004656.1-201ENST00000568479 4951 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RNU6-1106P-201ENST00000390845 107 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RNU6-328P-201ENST00000390887 106 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 EI24P1-201ENST00000416584 867 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 BMS1P17-202ENST00000416720 316 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AF186996.5-201ENST00000418098 904 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AL353621.1-201ENST00000418219 243 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RPS15AP6-201ENST00000420703 385 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AL158156.1-201ENST00000422509 473 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AL133173.1-201ENST00000423458 397 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RPL27AP8-201ENST00000424277 446 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 MRPS21P2-201ENST00000424704 264 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 UBE2V1P4-201ENST00000425374 344 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AL356867.1-201ENST00000429623 299 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 OR6D1P-201ENST00000436165 939 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 USP9YP7-201ENST00000436723 430 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 MTND3P2-201ENST00000438452 342 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RPS24P13-201ENST00000442520 397 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RPL36AP39-201ENST00000445859 318 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AL450023.1-201ENST00000450868 751 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 USP9YP32-201ENST00000452432 430 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AZGP1P2-201ENST00000454506 345 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RNU6-120P-201ENST00000516077 103 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RNA5SP384-201ENST00000516615 116 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AL049872.1-201ENST00000556323 322 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 MRO-208ENST00000588444 866 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AC104695.2-201ENST00000605056 775 ntBASIC4.3□□□□□ -1.72
CCDC140Q96MF4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.3□□□□□ -1.72
CCDC140Q96MF4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 PNISR-201ENST00000369239 5112 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RNA5SP453-201ENST00000362503 119 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.33-201ENST00000362591 102 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.148-201ENST00000363557 117 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 Y_RNA.245-201ENST00000364493 95 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AL445529.1-201ENST00000398713 389 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AL356057.3-201ENST00000402607 340 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RNU2-3P-201ENST00000410144 191 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.29□□□□□ -1.72
CCDC140Q96MF4 CYP4F29P-201ENST00000420685 446 ntBASIC4.29□□□□□ -1.72
CCDC140Q96MF4 RPL21P66-201ENST00000426566 466 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms