Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SLC44A3Q8N4M1 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SLC44A3Q8N4M1 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC4.34□□□□□ -1.72
SLC44A3Q8N4M1 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.34□□□□□ -1.72
SLC44A3Q8N4M1 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
SLC44A3Q8N4M1 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
SLC44A3Q8N4M1 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 ZNF33BP1-201ENST00000452497 1834 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 UTS2-202ENST00000361696 559 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 RNA5SP307-201ENST00000362863 116 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 Y_RNA.86-201ENST00000363020 111 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 RNU6-1322P-201ENST00000364309 107 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 SNORA73.2-201ENST00000364946 201 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC019155.1-201ENST00000382242 574 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 RNU6-730P-201ENST00000383954 104 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 EIF5P1-201ENST00000400019 1231 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 RPS4XP8-201ENST00000402039 771 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AL359704.1-201ENST00000411586 781 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC078974.1-201ENST00000411597 223 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC093578.1-201ENST00000415219 368 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 SNRPGP6-201ENST00000451124 220 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 APOOP2-201ENST00000461561 539 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 HMGN1P10-201ENST00000474557 553 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AF213884.1-201ENST00000488102 463 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC090453.1-201ENST00000495560 436 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC026726.1-201ENST00000512859 601 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 RNA5SP446-201ENST00000515955 82 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 snoU109.6-201ENST00000516831 118 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 RNU6-835P-201ENST00000516974 104 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AF186190.1-201ENST00000517470 480 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 HIF1AP1-201ENST00000553642 175 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC007424.1-203ENST00000554613 687 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 SUB1P2-201ENST00000556401 297 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AP001429.1-201ENST00000602568 530 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC010680.3-201ENST00000604215 520 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 MIR98-201ENST00000606724 119 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AL121772.2-201ENST00000614331 297 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AC140113.4-201ENST00000622087 222 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 CR392039.4-201ENST00000624968 501 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 AL672167.1-203ENST00000641299 2975 ntBASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SLC44A3Q8N4M1 LINC01109-201ENST00000603837 3081 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AL161912.2-201ENST00000565707 3007 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 SLC25A46-206ENST00000509432 1596 ntTSL 2 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AL049780.3-201ENST00000624612 1583 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 THUMPD3P1-201ENST00000506556 1480 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 IMPG2-201ENST00000193391 8337 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RNU5E-1-201ENST00000362477 120 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RNA5SP124-201ENST00000362739 110 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 Y_RNA.72-201ENST00000362894 103 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 Y_RNA.142-201ENST00000363491 102 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RNU6-525P-201ENST00000363685 104 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RNU6-359P-201ENST00000365466 108 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 Y_RNA.356-201ENST00000365475 113 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RNA5SP151-201ENST00000365632 117 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 MIR7-3-201ENST00000384898 110 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AL356057.2-201ENST00000403318 432 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RNA5SP118-201ENST00000410385 109 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RNU4-6P-201ENST00000410804 122 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 SNORA74C-2-201ENST00000411179 201 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 Z74021.1-201ENST00000423610 407 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RPL7P54-201ENST00000438336 674 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 FAM103A2P-201ENST00000444122 354 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 RPL7P49-201ENST00000471402 708 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AC083798.1-201ENST00000472671 131 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AC010301.1-201ENST00000473936 355 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 NAF1-205ENST00000509434 385 ntTSL 3 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 Y_RNA.701-201ENST00000516812 110 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AC008127.2-201ENST00000549925 1075 ntBASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC4.32□□□□□ -1.72
SLC44A3Q8N4M1 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC4.32□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 110.8 ms