Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SNORD48-201ENST00000364953 64 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 OR1L1-202ENST00000373686 1083 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 MIR221-201ENST00000385135 110 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AL139039.1-201ENST00000401900 692 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 RNU6-955P-201ENST00000410497 104 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 RNA5SP270-201ENST00000411361 118 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 EEF1A1P41-201ENST00000414667 207 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 EIF4EP4-201ENST00000424916 578 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AL358075.3-201ENST00000426289 226 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC027124.2-201ENST00000428249 105 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 Z80107.1-201ENST00000436830 412 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 WASF1P1-201ENST00000447560 1131 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AL500527.1-201ENST00000448532 255 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 DCLRE1CP1-201ENST00000454630 470 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 RPL21P99-201ENST00000480369 423 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 SCARNA16.3-201ENST00000516595 184 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AP005205.1-201ENST00000563503 508 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC087481.2-201ENST00000565492 330 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AP005901.2-201ENST00000581690 525 ntTSL 3 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC011471.1-201ENST00000585766 187 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC078899.2-201ENST00000595282 212 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC005034.5-201ENST00000604219 466 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AP001330.4-201ENST00000604350 154 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC106900.2-201ENST00000604994 317 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 YPEL5P2-201ENST00000605553 359 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC103710.4-201ENST00000609301 899 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC048341.3-201ENST00000619323 491 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC012150.2-201ENST00000621300 544 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC073592.7-201ENST00000623659 507 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 OR8B1P-202ENST00000641132 1178 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC087359.1-201ENST00000508335 1740 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 RNU6-198P-201ENST00000384258 104 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 MIR518C-201ENST00000384822 101 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 BTF3P7-201ENST00000407097 488 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC107081.1-201ENST00000414975 361 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC009276.1-201ENST00000422042 253 ntTSL 5 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 RPS15AP27-201ENST00000449183 343 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 BTF3P5-201ENST00000457252 467 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC079203.1-201ENST00000487972 404 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC140059.1-201ENST00000489238 361 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC023141.11-201ENST00000508864 202 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 TEMN3-AS1-201ENST00000510211 401 ntTSL 3 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC114284.1-201ENST00000511422 1114 ntTSL 2 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC118465.1-201ENST00000513820 1271 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AP005639.2-201ENST00000527592 928 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 CR383656.6-201ENST00000550518 394 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 PSMA4-206ENST00000558341 719 ntTSL 5 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 CYCSP39-201ENST00000565821 309 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 MIR4419B-201ENST00000577260 68 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 MIR4285-201ENST00000581001 85 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC067959.1-201ENST00000604334 379 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC135507.1-201ENST00000607214 561 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC010809.3-201ENST00000621310 641 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC012442.3-202ENST00000636742 206 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AC012618.3-205ENST00000637896 1496 ntBASIC1.16□□□□□ -2.22
LINC00643Q86TS7 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC1.16□□□□□ -2.22
LINC00643Q86TS7 AL049737.1-201ENST00000413920 1403 ntBASIC1.15□□□□□ -2.22
LINC00643Q86TS7 EXTL2-201ENST00000370113 2835 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
LINC00643Q86TS7 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
LINC00643Q86TS7 RNU6-859P-201ENST00000362728 107 ntBASIC1.15□□□□□ -2.23
LINC00643Q86TS7 SNORA23-201ENST00000365128 182 ntBASIC1.15□□□□□ -2.23
LINC00643Q86TS7 MIR767-201ENST00000390228 109 ntBASIC1.15□□□□□ -2.23
LINC00643Q86TS7 U3.29-201ENST00000391296 212 ntBASIC1.15□□□□□ -2.23
LINC00643Q86TS7 CYCSP45-201ENST00000402289 315 ntBASIC1.15□□□□□ -2.23
LINC00643Q86TS7 RNA5SP498-201ENST00000411342 120 ntBASIC1.15□□□□□ -2.23
LINC00643Q86TS7 AL133384.1-201ENST00000412744 351 ntBASIC1.15□□□□□ -2.23
LINC00643Q86TS7 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC1.15□□□□□ -2.23
LINC00643Q86TS7 HSFY1P1-201ENST00000423928 1178 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms