Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 MFF-206ENST00000392059 1710 ntTSL 5 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC090337.1-201ENST00000579651 2074 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RNU1-14P-201ENST00000362759 152 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RNU5A-8P-201ENST00000364102 114 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RNY1P12-201ENST00000364251 105 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP515-201ENST00000364570 118 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 SNORA20.2-201ENST00000383922 131 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.402-201ENST00000383972 102 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.481-201ENST00000384373 102 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MIR19A-201ENST00000384878 82 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 SNORD115-47-201ENST00000391226 86 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RPS26P8-201ENST00000393490 348 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.604-201ENST00000410574 102 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RNU2-62P-201ENST00000410868 191 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RNA5SP39-201ENST00000411245 120 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RPL17P36-201ENST00000420302 549 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC092832.1-201ENST00000422934 400 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC019097.1-201ENST00000424783 735 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MTCO2P19-201ENST00000427513 598 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 CKS1BP5-201ENST00000434172 273 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 TIMM9P1-201ENST00000436122 256 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RPS4XP4-201ENST00000443195 763 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RAC1P7-201ENST00000445367 377 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 RPL23AP20-201ENST00000447965 421 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MTND2P24-201ENST00000453434 806 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 PRDX4P1-201ENST00000507189 574 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AL592156.1-201ENST00000508758 304 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC006499.6-201ENST00000511169 607 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC026402.1-201ENST00000513642 170 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC025884.1-201ENST00000556034 378 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MTCO3P24-201ENST00000572729 782 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 COX6CP3-201ENST00000580869 223 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC068790.5-201ENST00000602741 355 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC067959.1-201ENST00000604334 379 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 IGHV3-29-201ENST00000604817 344 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MIR432-201ENST00000606207 94 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AP002360.4-201ENST00000606980 481 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 AC004908.2-201ENST00000609090 574 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 MIR6715B-201ENST00000637172 77 ntBASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
PTCHD3Q3KNS1 OSBPL9P4-201ENST00000371707 1800 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 SPATA31D2P-201ENST00000429999 4388 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 OR5J1P-201ENST00000313544 939 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 MIR448-201ENST00000362131 111 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 Y_RNA.126-201ENST00000363382 111 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-1078P-201ENST00000364522 103 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RNY4P16-201ENST00000364768 94 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-282P-201ENST00000365357 103 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AKAP14-203ENST00000371425 793 ntAPPRIS ALT2 TSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 MIR93-201ENST00000385024 80 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RNU6-837P-201ENST00000391056 108 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 MIR1179-201ENST00000408703 91 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RN7SKP285-201ENST00000410137 318 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC069285.2-201ENST00000440210 275 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC108059.3-201ENST00000456388 214 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RPS29P19-201ENST00000479709 171 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 RN7SL691P-201ENST00000494487 301 ntBASIC4.11□□□□□ -1.75
PTCHD3Q3KNS1 AC116353.2-201ENST00000505332 712 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms