Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
SOX3P41225 SNORA63.1-201ENST00000362493 131 ntBASIC3.26□□□□□ -1.89
SOX3P41225 MIR183-201ENST00000384958 110 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AL583834.1-201ENST00000406943 343 ntBASIC3.26□□□□□ -1.89
SOX3P41225 MOB4-205ENST00000409916 829 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.26□□□□□ -1.89
SOX3P41225 HSFY4P-201ENST00000415994 1181 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 AC244098.2-201ENST00000422068 99 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AL512649.1-201ENST00000428997 581 ntBASIC3.26□□□□□ -1.89
SOX3P41225 BX679664.1-201ENST00000434429 253 ntBASIC3.26□□□□□ -1.89
SOX3P41225 LSM1P1-201ENST00000438629 273 ntBASIC3.26□□□□□ -1.89
SOX3P41225 SDCBPP1-201ENST00000440192 890 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC3.26□□□□□ -1.89
SOX3P41225 PAXBP1P1-201ENST00000449315 447 ntBASIC3.26□□□□□ -1.89
SOX3P41225 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 CYCSP35-201ENST00000451978 304 ntBASIC3.26□□□□□ -1.89
SOX3P41225 RPS27AP8-201ENST00000452665 445 ntBASIC3.26□□□□□ -1.89
SOX3P41225 PRSS3P4-201ENST00000453323 162 ntBASIC3.26□□□□□ -1.89
SOX3P41225 HMGB1P15-201ENST00000453854 435 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.26□□□□□ -1.89
SOX3P41225 RPS4XP2-201ENST00000458402 793 ntBASIC3.26□□□□□ -1.89
SOX3P41225 RPL7P49-201ENST00000471402 708 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC084357.1-201ENST00000473404 255 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC104563.1-201ENST00000476147 376 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC025518.1-201ENST00000479856 347 ntBASIC3.26□□□□□ -1.89
SOX3P41225 COX7A2P2-201ENST00000505291 250 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.26□□□□□ -1.89
SOX3P41225 NDUFB4P9-201ENST00000511646 388 ntBASIC3.26□□□□□ -1.89
SOX3P41225 OR5BM1P-201ENST00000512021 366 ntBASIC3.26□□□□□ -1.89
SOX3P41225 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 AC093677.1-201ENST00000514414 678 ntBASIC3.26□□□□□ -1.89
SOX3P41225 MTND5P4-201ENST00000514978 288 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC090857.2-201ENST00000526362 723 ntTSL 2 BASIC3.26□□□□□ -1.89
SOX3P41225 OR4P1P-201ENST00000530808 1136 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 AP000786.1-201ENST00000541092 581 ntTSL 4 BASIC3.26□□□□□ -1.89
SOX3P41225 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.26□□□□□ -1.89
SOX3P41225 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 MIR3186-201ENST00000577404 85 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC090616.5-202ENST00000582111 297 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 AC110760.3-201ENST00000598794 467 ntBASIC3.26□□□□□ -1.89
SOX3P41225 HMGN2P28-201ENST00000606102 262 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC097468.3-201ENST00000607956 456 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC107214.2-201ENST00000608204 634 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC084757.4-201ENST00000616350 526 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC092628.2-201ENST00000622492 339 ntBASIC3.26□□□□□ -1.89
SOX3P41225 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.26□□□□□ -1.89
SOX3P41225 INPP4B-223ENST00000630044 354 ntTSL 5 BASIC3.26□□□□□ -1.89
SOX3P41225 U6.105-201ENST00000637379 88 ntBASIC3.26□□□□□ -1.89
SOX3P41225 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.26□□□□□ -1.89
SOX3P41225 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
SOX3P41225 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SOX3P41225 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.25□□□□□ -1.89
SOX3P41225 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SOX3P41225 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SOX3P41225 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
SOX3P41225 AL672167.1-206ENST00000356293 943 ntBASIC3.25□□□□□ -1.89
SOX3P41225 FRG1CP-201ENST00000358464 769 ntBASIC3.25□□□□□ -1.89
SOX3P41225 RNU4-40P-201ENST00000364351 143 ntBASIC3.25□□□□□ -1.89
SOX3P41225 MIR490-201ENST00000384865 128 ntBASIC3.25□□□□□ -1.89
SOX3P41225 RNU6-837P-201ENST00000391056 108 ntBASIC3.25□□□□□ -1.89
SOX3P41225 SKINT1L-201ENST00000401057 817 ntBASIC3.25□□□□□ -1.89
SOX3P41225 MIR1305-201ENST00000408300 86 ntBASIC3.25□□□□□ -1.89
SOX3P41225 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC3.25□□□□□ -1.89
SOX3P41225 BX842559.1-201ENST00000419615 532 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC3.25□□□□□ -1.89
SOX3P41225 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.25□□□□□ -1.89
SOX3P41225 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.25□□□□□ -1.89
SOX3P41225 ATP5JP1-201ENST00000431631 322 ntBASIC3.25□□□□□ -1.89
SOX3P41225 MTCYBP45-201ENST00000435243 565 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AL512286.1-201ENST00000439244 400 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AL353691.1-201ENST00000451332 387 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC3.25□□□□□ -1.89
SOX3P41225 BTF3P5-201ENST00000457252 467 ntBASIC3.25□□□□□ -1.89
SOX3P41225 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.25□□□□□ -1.89
SOX3P41225 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC3.25□□□□□ -1.89
SOX3P41225 RPS4XP22-201ENST00000480755 780 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC023424.2-201ENST00000493479 777 ntBASIC3.25□□□□□ -1.89
SOX3P41225 OR2A20P-203ENST00000498397 1268 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC020893.1-201ENST00000502452 580 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC3.25□□□□□ -1.89
SOX3P41225 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.25□□□□□ -1.89
SOX3P41225 POU5F1P7-201ENST00000508759 541 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC3.25□□□□□ -1.89
SOX3P41225 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC3.25□□□□□ -1.89
SOX3P41225 RNU6-579P-201ENST00000516879 102 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC084116.2-201ENST00000520171 415 ntTSL 4 BASIC3.25□□□□□ -1.89
SOX3P41225 AC106038.2-201ENST00000520706 568 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AP006245.1-201ENST00000522549 120 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AL356057.1-201ENST00000533798 831 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC068587.4-201ENST00000533893 186 ntBASIC3.25□□□□□ -1.89
SOX3P41225 AC007458.1-201ENST00000542812 373 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms