Protein–RNA interactions for Protein: P30622

CLIP1, CAP-Gly domain-containing linker protein 1, humanhuman

Predictions only

Length 1,438 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1P30622 HMGB3P30-201ENST00000457863 606 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 SNORD116-26-201ENST00000516006 96 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 AP001029.3-201ENST00000588063 596 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 AC020895.1-201ENST00000595362 272 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 VN1R80P-201ENST00000597126 338 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 XKRY2-202ENST00000623874 1581 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 XKRY-202ENST00000624960 1581 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 KPNA2P1-201ENST00000458289 1591 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 MIR1287-201ENST00000408492 90 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 RPL23AP39-201ENST00000415533 405 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 AC114973.1-201ENST00000429057 632 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 RPL23AP76-201ENST00000441860 458 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC2.85□□□□□ -1.95
CLIP1P30622 DPPA3P1-201ENST00000448050 469 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 AL137847.2-201ENST00000458111 527 ntTSL 3 BASIC2.85□□□□□ -1.95
CLIP1P30622 AL606519.1-201ENST00000458146 580 ntTSL 2 BASIC2.85□□□□□ -1.95
CLIP1P30622 RNU6-56P-201ENST00000516986 93 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 AC010735.1-201ENST00000567305 1026 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.85□□□□□ -1.95
CLIP1P30622 AC006270.2-201ENST00000578523 652 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC2.85□□□□□ -1.95
CLIP1P30622 ZNF788-206ENST00000596883 692 ntTSL 3 BASIC2.85□□□□□ -1.95
CLIP1P30622 AL590099.1-201ENST00000615276 138 ntBASIC2.85□□□□□ -1.95
CLIP1P30622 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
CLIP1P30622 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.84□□□□□ -1.95
CLIP1P30622 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.84□□□□□ -1.96
CLIP1P30622 MIR378A-201ENST00000362177 66 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 RNU6-661P-201ENST00000362409 107 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 RNA5SP295-201ENST00000362655 121 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC2.84□□□□□ -1.96
CLIP1P30622 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC2.84□□□□□ -1.96
CLIP1P30622 RPS15AP1-201ENST00000457423 391 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 AC090453.1-201ENST00000495560 436 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.84□□□□□ -1.96
CLIP1P30622 AP004242.1-201ENST00000533701 349 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.84□□□□□ -1.96
CLIP1P30622 AC008687.2-201ENST00000597865 520 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 AC113368.1-201ENST00000603736 382 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 OR1S1-201ENST00000624470 978 ntBASIC2.84□□□□□ -1.96
CLIP1P30622 SNORA16.1-201ENST00000364597 132 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 RPL21P75-201ENST00000396599 483 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 RPL21P28-201ENST00000401418 483 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 AL592114.1-201ENST00000403842 483 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 RNU6-321P-201ENST00000410912 106 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 ABCC5-AS1-201ENST00000422946 469 ntTSL 2 BASIC2.83□□□□□ -1.96
CLIP1P30622 HMGB1P12-201ENST00000438594 598 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 ELOCP13-201ENST00000443934 329 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 RPL21P39-201ENST00000463605 483 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 AC011979.1-201ENST00000472300 483 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 RPL21P93-201ENST00000480465 489 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 AC233702.1-201ENST00000482905 502 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 AC093591.1-201ENST00000491435 481 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 RPL21P16-201ENST00000495531 483 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 SNX5P1-201ENST00000505757 1041 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC2.83□□□□□ -1.96
CLIP1P30622 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC2.83□□□□□ -1.96
CLIP1P30622 SNHG22-203ENST00000617833 660 ntBASIC2.83□□□□□ -1.96
CLIP1P30622 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
CLIP1P30622 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.82□□□□□ -1.96
CLIP1P30622 AC107021.2-201ENST00000567714 2095 ntBASIC2.82□□□□□ -1.96
CLIP1P30622 Y_RNA.118-201ENST00000363300 101 ntBASIC2.82□□□□□ -1.96
CLIP1P30622 RNA5SP270-201ENST00000411361 118 ntBASIC2.82□□□□□ -1.96
CLIP1P30622 XKRY2-201ENST00000442362 1093 ntBASIC2.82□□□□□ -1.96
CLIP1P30622 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.82□□□□□ -1.96
CLIP1P30622 MLLT10P2-201ENST00000506434 249 ntBASIC2.82□□□□□ -1.96
CLIP1P30622 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC2.82□□□□□ -1.96
CLIP1P30622 AC090617.7-201ENST00000623952 126 ntBASIC2.82□□□□□ -1.96
CLIP1P30622 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
CLIP1P30622 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.82□□□□□ -1.96
CLIP1P30622 MTND4P1-201ENST00000457501 1466 ntBASIC2.82□□□□□ -1.96
CLIP1P30622 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CLIP1P30622 AC012181.1-201ENST00000479895 423 ntBASIC2.81□□□□□ -1.96
CLIP1P30622 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
CLIP1P30622 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC2.81□□□□□ -1.96
CLIP1P30622 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC2.81□□□□□ -1.96
CLIP1P30622 AC090751.1-201ENST00000566966 267 ntBASIC2.81□□□□□ -1.96
CLIP1P30622 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.81□□□□□ -1.96
CLIP1P30622 AL049779.4-201ENST00000604500 156 ntBASIC2.81□□□□□ -1.96
CLIP1P30622 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
CLIP1P30622 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.81□□□□□ -1.96
CLIP1P30622 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLIP1P30622 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLIP1P30622 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC2.8□□□□□ -1.96
CLIP1P30622 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLIP1P30622 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
CLIP1P30622 AL353729.1-201ENST00000425044 720 ntBASIC2.8□□□□□ -1.96
CLIP1P30622 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.8□□□□□ -1.96
CLIP1P30622 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.8□□□□□ -1.96
CLIP1P30622 HMGB3P21-201ENST00000452483 547 ntBASIC2.8□□□□□ -1.96
CLIP1P30622 AC011611.5-201ENST00000552477 578 ntBASIC2.8□□□□□ -1.96
CLIP1P30622 YWHAQP7-201ENST00000603536 658 ntBASIC2.8□□□□□ -1.96
CLIP1P30622 MIR8081-201ENST00000611533 95 ntBASIC2.8□□□□□ -1.96
CLIP1P30622 AL512643.1-201ENST00000635735 524 ntBASIC2.8□□□□□ -1.96
CLIP1P30622 CNOT6LP1-201ENST00000559681 1462 ntBASIC2.8□□□□□ -1.96
CLIP1P30622 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.8□□□□□ -1.96
CLIP1P30622 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC2.79□□□□□ -1.96
CLIP1P30622 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
CLIP1P30622 SNORA51.11-201ENST00000384442 131 ntBASIC2.79□□□□□ -1.96
CLIP1P30622 SNORA67.5-201ENST00000391036 107 ntBASIC2.79□□□□□ -1.96
CLIP1P30622 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 86.4 ms