Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AL161781.1-201ENST00000354277 403 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 MIR134-201ENST00000385258 73 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 MIR199A2-201ENST00000385289 110 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 U8.14-201ENST00000390843 143 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AL356421.1-201ENST00000403255 413 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 MIR1305-201ENST00000408300 86 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 SEPT2P1-201ENST00000419651 180 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC002075.2-201ENST00000425207 252 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 MED14P1-201ENST00000430517 648 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 RPL7P36-201ENST00000444633 681 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 BMI1P1-201ENST00000445879 941 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 RPS29P31-201ENST00000446147 164 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AL359073.1-201ENST00000448036 403 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 TMED11P-201ENST00000479478 690 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC106872.3-201ENST00000495104 446 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC022447.3-201ENST00000506865 495 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 MTCO3P28-201ENST00000513351 515 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC108064.1-201ENST00000513791 460 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC017037.2-201ENST00000513850 890 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC116347.2-201ENST00000514912 523 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 SNORA70.14-201ENST00000516205 110 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 RN7SKP209-201ENST00000516888 304 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 RNU6-1231P-201ENST00000517185 103 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 NAT2-202ENST00000520116 716 ntTSL 3 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC007115.1-201ENST00000546853 234 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC087481.2-201ENST00000565492 330 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 MIR3186-201ENST00000577404 85 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 ABBA01006766.1-201ENST00000584728 294 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC119751.7-201ENST00000600494 245 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC012065.4-201ENST00000602445 679 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AL592436.1-201ENST00000605135 558 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC055876.5-201ENST00000605667 259 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 SNORA62.6-201ENST00000606322 83 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 AL590099.1-201ENST00000615276 138 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC004777.1-201ENST00000624317 287 ntBASIC3.23□□□□□ -1.89
NKX3-1Q99801 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.23□□□□□ -1.89
NKX3-1Q99801 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
NKX3-1Q99801 AC006378.2-201ENST00000623178 2476 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
NKX3-1Q99801 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 RPS27AP14-201ENST00000422868 454 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 VN1R108P-201ENST00000431580 830 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC098826.1-201ENST00000433943 471 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 MTND4LP10-201ENST00000435146 291 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 RPL37P21-201ENST00000435890 276 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AL138799.3-201ENST00000438968 350 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 FAM103A2P-201ENST00000444122 354 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AL163192.1-201ENST00000448858 708 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC009961.3-201ENST00000449832 765 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 ANP32BP2-201ENST00000454525 545 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 Z82190.1-201ENST00000454534 490 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 MTCO1P42-201ENST00000457379 726 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 RPL9P32-201ENST00000464118 620 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 RPS3AP50-201ENST00000487064 803 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AP001025.2-201ENST00000490908 477 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC078918.1-201ENST00000498515 228 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC021678.1-201ENST00000505195 936 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 TXNP6-201ENST00000510190 310 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC091965.2-201ENST00000512324 613 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 NPM1P41-201ENST00000512920 831 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 SCARNA14-201ENST00000516903 136 ntBASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 SMILR-201ENST00000533992 553 ntTSL 4 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.22□□□□□ -1.89
NKX3-1Q99801 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms