Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MTCO3P13-201ENST00000577757 781 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 MIR4421-201ENST00000578133 69 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 AL139286.1-201ENST00000604465 483 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 AC092447.7-201ENST00000422212 1621 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 snoU109.4-201ENST00000458953 143 ntBASIC1.77□□□□□ -2.13
VPS13AQ96RL7 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS13AQ96RL7 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 RNU2-20P-201ENST00000410425 191 ntBASIC1.76□□□□□ -2.13
VPS13AQ96RL7 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 Z99714.1-201ENST00000450463 807 ntBASIC1.76□□□□□ -2.13
VPS13AQ96RL7 AL645939.4-201ENST00000604495 135 ntBASIC1.76□□□□□ -2.13
VPS13AQ96RL7 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 KRR1-202ENST00000438169 975 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 USP9YP10-201ENST00000454868 628 ntBASIC1.76□□□□□ -2.13
VPS13AQ96RL7 MTND3P6-201ENST00000485242 339 ntBASIC1.76□□□□□ -2.13
VPS13AQ96RL7 SEPT7P7-201ENST00000420492 1301 ntBASIC1.76□□□□□ -2.13
VPS13AQ96RL7 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC1.76□□□□□ -2.13
VPS13AQ96RL7 TRIM60P13-201ENST00000432350 1283 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AL138787.1-202ENST00000437804 898 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AP000705.1-201ENST00000454567 350 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 TPMTP1-201ENST00000592307 737 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 MTND4P23-201ENST00000447723 1363 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AC002524.1-201ENST00000411687 547 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AC105429.2-201ENST00000610567 517 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AL133216.2-202ENST00000634512 349 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AC093767.1-201ENST00000504523 156 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 RNA5SP385-201ENST00000515947 110 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AC022634.1-201ENST00000520765 532 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS13AQ96RL7 AL592437.2-201ENST00000421655 2434 ntBASIC1.75□□□□□ -2.13
VPS13AQ96RL7 PWAR6-201ENST00000552334 4618 ntBASIC1.74□□□□□ -2.13
VPS13AQ96RL7 TAS2R15P-201ENST00000390674 928 ntBASIC1.74□□□□□ -2.13
VPS13AQ96RL7 RNA5SP344-201ENST00000411081 104 ntBASIC1.74□□□□□ -2.13
VPS13AQ96RL7 AC017099.1-201ENST00000448261 1028 ntBASIC1.74□□□□□ -2.13
VPS13AQ96RL7 MIR7973-1-201ENST00000614683 76 ntBASIC1.74□□□□□ -2.13
VPS13AQ96RL7 SNORD88.1-201ENST00000408684 91 ntBASIC1.74□□□□□ -2.13
VPS13AQ96RL7 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.74□□□□□ -2.13
VPS13AQ96RL7 AL356575.1-201ENST00000603008 283 ntBASIC1.74□□□□□ -2.13
VPS13AQ96RL7 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
VPS13AQ96RL7 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 USP9YP15-201ENST00000442391 422 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 RPL23AP44-201ENST00000482216 473 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 MTCYBP17-201ENST00000503579 789 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 AP005137.2-201ENST00000609238 400 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 VN1R7P-201ENST00000619242 903 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 TOMM22P1-201ENST00000418578 312 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 BNIP3P2-201ENST00000441221 577 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 KATNBL1P3-201ENST00000443475 909 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 CALM1P2-201ENST00000452941 448 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 AC013562.2-201ENST00000611632 603 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 MTCO1P4-201ENST00000520516 1409 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 HSPD1P16-201ENST00000402302 394 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 POLHP1-201ENST00000411806 470 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 TPMTP3-201ENST00000411928 735 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 SLC44A3-AS1-205ENST00000424505 612 ntBASIC1.73□□□□□ -2.13
VPS13AQ96RL7 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 LINC01256-201ENST00000513270 508 ntTSL 2 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.73□□□□□ -2.13
VPS13AQ96RL7 Z98749.2-208ENST00000381646 500 ntBASIC1.72□□□□□ -2.13
VPS13AQ96RL7 PAICSP7-201ENST00000419829 962 ntBASIC1.72□□□□□ -2.13
VPS13AQ96RL7 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 AP001804.3-201ENST00000525146 880 ntBASIC1.72□□□□□ -2.13
VPS13AQ96RL7 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC1.72□□□□□ -2.13
VPS13AQ96RL7 AC010297.1-201ENST00000623948 149 ntBASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms