Protein–RNA interactions for Protein: Q96PN7

TRERF1, Transcriptional-regulating factor 1, humanhuman

Predictions only

Length 1,200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1Q96PN7 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC6□□□□□ -1.45
TRERF1Q96PN7 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC6□□□□□ -1.45
TRERF1Q96PN7 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 Y_RNA.152-201ENST00000363578 100 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 RN7SKP103-201ENST00000363848 320 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 RNU6-641P-201ENST00000384006 107 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 RNU6-729P-201ENST00000384399 107 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 Y_RNA.562-201ENST00000384695 113 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC016769.3-201ENST00000396562 315 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 GJA6P-201ENST00000415117 1042 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AL133482.1-201ENST00000415988 498 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 ACTR3BP6-201ENST00000422332 1241 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 MED13P1-201ENST00000428342 171 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC236972.1-201ENST00000433225 199 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC104332.1-201ENST00000440471 797 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 RPL21P133-201ENST00000443666 476 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AL353752.1-201ENST00000454946 260 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC112492.4-201ENST00000456549 352 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC022447.4-201ENST00000504053 364 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC022493.2-201ENST00000506122 481 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 RNU6-111P-201ENST00000517179 105 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 OR4P1P-201ENST00000530808 1136 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC017100.2-201ENST00000584628 355 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC011155.2-201ENST00000623202 216 ntBASIC5.99□□□□□ -1.45
TRERF1Q96PN7 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.99□□□□□ -1.45
TRERF1Q96PN7 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL161781.1-201ENST00000354277 403 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 Y_RNA.26-201ENST00000362539 101 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 RN7SKP104-201ENST00000362605 328 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 Y_RNA.376-201ENST00000365638 108 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 RNU6-444P-201ENST00000383988 108 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 SNORA51.8-201ENST00000384234 132 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 MIR1302-6-201ENST00000408466 90 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 RNU2-23P-201ENST00000410545 195 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 RN7SKP235-201ENST00000410662 305 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 GSTM3P2-201ENST00000412746 530 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 E2F6P2-201ENST00000420708 748 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL359265.2-201ENST00000434367 631 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL031584.1-201ENST00000447169 754 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AC093267.1-201ENST00000489176 961 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 OR11H5P-201ENST00000554039 926 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AL512782.1-201ENST00000603093 364 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AC108738.1-201ENST00000603703 237 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AC103858.2-201ENST00000621471 543 ntBASIC5.98□□□□□ -1.45
TRERF1Q96PN7 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
TRERF1Q96PN7 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.97□□□□□ -1.45
TRERF1Q96PN7 LINC01355-201ENST00000566551 5444 ntBASIC5.97□□□□□ -1.45
TRERF1Q96PN7 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
TRERF1Q96PN7 RAD51AP1-201ENST00000228843 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
TRERF1Q96PN7 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
TRERF1Q96PN7 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.97□□□□□ -1.45
TRERF1Q96PN7 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 115.5 ms