Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL451074.3-201ENST00000437709 472 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 HMGB1P48-201ENST00000446155 598 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 MEG8-218ENST00000556720 456 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 TP73-AS1.1-201ENST00000611447 161 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL390240.1-201ENST00000612950 384 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 TRMT112P2-201ENST00000512910 132 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 MYL12BP1-201ENST00000569826 507 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 HSPE1P26-201ENST00000405341 275 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 RPL23AP42-201ENST00000471152 471 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL121594.1-201ENST00000475906 575 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 RN7SKP219-201ENST00000516825 296 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL133271.1-201ENST00000538229 291 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 CENPUP2-201ENST00000555897 1186 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 MIR5092-201ENST00000583139 88 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC005296.1-201ENST00000616145 209 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL162233.1-201ENST00000620014 944 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC090617.7-201ENST00000623952 126 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 VTRNA1-1-201ENST00000363120 99 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL157827.1-201ENST00000447622 132 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL137159.1-201ENST00000452808 512 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 G2E3-AS1-204ENST00000552511 402 ntTSL 2 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC126118.1-201ENST00000607744 628 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 PVT1_3.1-201ENST00000620853 95 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 MIR21-201ENST00000362134 72 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 RNU6-356P-201ENST00000384140 107 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 CCNB2P1-201ENST00000399411 1150 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 BUD31P2-201ENST00000449374 300 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 CLIC4P1-201ENST00000453177 535 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 LIAS-206ENST00000513731 826 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AK6P1-201ENST00000540219 478 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC117377.1-201ENST00000547633 1038 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 DUXAP4-201ENST00000603046 613 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC233981.2-201ENST00000611524 1614 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 SNORA31-201ENST00000362607 130 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 CCDC169-203ENST00000379862 624 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AP000275.1-201ENST00000411943 390 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL590399.6-201ENST00000446396 307 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 TVP23BP2-201ENST00000455082 615 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 TRBV26-201ENST00000456572 344 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC012181.1-201ENST00000479895 423 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 RNA5SP61-201ENST00000516453 100 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 LINC00216-201ENST00000623548 1126 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 IL36B-202ENST00000327407 1052 ntAPPRIS P1 TSL 1 (best) BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL096701.2-201ENST00000416920 238 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 Z75741.2-201ENST00000417272 1167 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AL358075.3-201ENST00000426289 226 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC009961.3-201ENST00000449832 765 ntBASIC0.69□□□□□ -2.3
SYNE1Q8NF91 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 MEF2C-AS1-208ENST00000512585 741 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC0.69□□□□□ -2.3
SYNE1Q8NF91 AC009501.3-201ENST00000605001 1352 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 MIR1276-201ENST00000408707 83 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 RPS20P25-201ENST00000412447 352 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC0.68□□□□□ -2.3
SYNE1Q8NF91 RPL23AP76-201ENST00000441860 458 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 ST13P20-201ENST00000447996 1065 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 AL590639.1-201ENST00000456484 337 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 GZMAP1-201ENST00000503054 631 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
SYNE1Q8NF91 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.68□□□□□ -2.3
SYNE1Q8NF91 ERHP2-201ENST00000402323 299 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 COX6CP2-201ENST00000444980 225 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
SYNE1Q8NF91 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.68□□□□□ -2.3
SYNE1Q8NF91 AC005021.1-201ENST00000608730 355 ntBASIC0.68□□□□□ -2.3
SYNE1Q8NF91 AC010338.1-201ENST00000621823 717 ntBASIC0.68□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms