Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 SDAD1P2-201ENST00000441308 2028 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 SNORD21-201ENST00000383953 95 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC007066.1-201ENST00000392902 381 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 SYF2P2-201ENST00000417620 583 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC129850.1-201ENST00000436203 508 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 HMGB3P11-201ENST00000440127 604 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC008264.1-201ENST00000447612 367 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC097262.1-201ENST00000452559 548 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC108733.1-201ENST00000479244 705 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 RPL21P131-201ENST00000497298 483 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 CAB39P1-201ENST00000502277 460 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC093801.2-201ENST00000503966 1050 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC109464.2-201ENST00000510242 943 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC112178.1-201ENST00000511165 676 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 RNU6-798P-201ENST00000516912 103 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 OR4K8P-201ENST00000578842 1048 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC010620.2-201ENST00000600135 313 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AL445435.1-201ENST00000604232 665 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC004853.1-201ENST00000604902 698 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC025588.4-201ENST00000615802 908 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 MIR6130-201ENST00000619419 109 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC073476.4-201ENST00000628409 72 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 MIR1322-201ENST00000638013 71 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 MTCO1P12-201ENST00000414273 1543 ntBASIC3.14□□□□□ -1.91
ZNF540Q8NDQ6 AC017071.1-201ENST00000564407 2204 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 Y_RNA.333-201ENST00000365274 102 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 RNA5SP354-201ENST00000391247 136 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC006960.1-201ENST00000419980 153 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC007742.1-201ENST00000425789 329 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 ELOCP26-201ENST00000436067 329 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 ARPC3P1-201ENST00000437218 533 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 USP9YP22-201ENST00000438971 294 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 RNF2P1-201ENST00000442955 1010 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 RPS3AP12-201ENST00000443616 753 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 MTCYBP42-201ENST00000444653 1130 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 MTND4LP3-201ENST00000468320 276 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC093663.1-201ENST00000497190 394 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC104619.4-201ENST00000510773 249 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC245166.1-201ENST00000521012 253 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC022861.1-201ENST00000522981 663 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC090615.1-201ENST00000577519 154 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 MIR5708-201ENST00000579723 85 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 ELOCP35-201ENST00000604289 336 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AL596245.1-201ENST00000618994 362 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 AC244258.1-201ENST00000637553 1071 ntBASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
ZNF540Q8NDQ6 MTND5P1-201ENST00000445440 1375 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 CDR1-202ENST00000625883 1485 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 SNRPEP3-201ENST00000338402 276 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 FRG1CP-201ENST00000358464 769 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 SNORA63.3-201ENST00000362682 132 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 RNA5SP387-201ENST00000364226 106 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 SNORD56.5-201ENST00000364281 72 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AL355143.1-201ENST00000407101 841 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 RPS3AP24-201ENST00000407896 734 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC007899.1-201ENST00000412776 775 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 MTCO2P5-201ENST00000422621 426 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 NDUFB4P7-201ENST00000423198 363 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 TAAR7P-201ENST00000436141 242 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 LSM1P1-201ENST00000438629 273 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 PTGES3P1-201ENST00000439531 483 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC092641.1-201ENST00000440229 772 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 RPL26P6-201ENST00000440913 438 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC005297.2-201ENST00000450430 606 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC073387.1-201ENST00000453261 709 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 WBP1LP4-201ENST00000505043 344 ntBASIC3.12□□□□□ -1.91
ZNF540Q8NDQ6 POU5F1P7-201ENST00000508759 541 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms