Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.55□□□□□ -1.52
USP48Q86UV5 SNORD56.2-201ENST00000363242 71 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 RNY3P3-201ENST00000363816 102 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 RNU6-1078P-201ENST00000364522 103 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 RNU1-13P-201ENST00000384499 162 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 Y_RNA.509-201ENST00000384506 99 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AC068050.1-201ENST00000394891 380 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AL356776.1-201ENST00000406574 447 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 TMSB10P2-201ENST00000416049 131 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 GTF2IP20-201ENST00000431663 360 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC5.55□□□□□ -1.52
USP48Q86UV5 TRAPPC2P9-201ENST00000434556 343 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 BNIP3P2-201ENST00000441221 577 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AL118496.2-201ENST00000448300 230 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.55□□□□□ -1.52
USP48Q86UV5 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC5.55□□□□□ -1.52
USP48Q86UV5 RN7SL810P-201ENST00000493031 276 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 RPL36AP41-201ENST00000493820 306 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AC020893.1-201ENST00000502452 580 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AC018710.1-201ENST00000506509 158 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5.55□□□□□ -1.52
USP48Q86UV5 LINC01335-201ENST00000507890 389 ntTSL 3 BASIC5.55□□□□□ -1.52
USP48Q86UV5 RNU6-798P-201ENST00000516912 103 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 CARD16-203ENST00000525374 503 ntTSL 3 BASIC5.55□□□□□ -1.52
USP48Q86UV5 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC5.55□□□□□ -1.52
USP48Q86UV5 AC011979.2-201ENST00000527568 352 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.55□□□□□ -1.52
USP48Q86UV5 HNRNPCP4-201ENST00000571636 900 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 MIR3158-1-201ENST00000583596 81 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 UBE2V2P2-201ENST00000587677 504 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 AL591034.3-201ENST00000605511 685 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.55□□□□□ -1.52
USP48Q86UV5 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.55□□□□□ -1.52
USP48Q86UV5 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP48Q86UV5 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
USP48Q86UV5 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
USP48Q86UV5 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
USP48Q86UV5 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.55□□□□□ -1.52
USP48Q86UV5 AC083843.3-201ENST00000623679 2186 ntBASIC5.55□□□□□ -1.52
USP48Q86UV5 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
USP48Q86UV5 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP48Q86UV5 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP48Q86UV5 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP48Q86UV5 ZNF680P1-201ENST00000436625 1469 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
USP48Q86UV5 OR2M2-201ENST00000359682 1044 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
USP48Q86UV5 RNU6-989P-201ENST00000362756 107 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 RNU6-278P-201ENST00000390945 109 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP48Q86UV5 RNU2-9P-201ENST00000410194 145 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 RNA5SP56-201ENST00000410277 118 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC5.54□□□□□ -1.52
USP48Q86UV5 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AC005517.2-201ENST00000424673 553 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AL606489.2-201ENST00000433886 234 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 MTND6P18-201ENST00000439477 513 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC5.54□□□□□ -1.52
USP48Q86UV5 RPL21P89-201ENST00000444021 467 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC5.54□□□□□ -1.52
USP48Q86UV5 RNU7-59P-201ENST00000459101 61 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AL049714.1-201ENST00000466686 347 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 APOA2-207ENST00000470459 416 ntTSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AP002812.1-201ENST00000495378 474 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 HMGN1P12-201ENST00000499125 195 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.54□□□□□ -1.52
USP48Q86UV5 SCARNA24.1-201ENST00000516465 137 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AP003730.1-201ENST00000524605 285 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AC105224.1-201ENST00000587055 421 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AL669831.4-202ENST00000590817 238 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AC044792.1-201ENST00000593294 196 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AC005034.5-201ENST00000604219 466 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 AC087045.1-201ENST00000605856 382 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AC128687.2-201ENST00000609657 566 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
USP48Q86UV5 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 AL049555.1-201ENST00000562834 1933 ntBASIC5.54□□□□□ -1.52
USP48Q86UV5 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.54□□□□□ -1.52
USP48Q86UV5 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC5.53□□□□□ -1.52
USP48Q86UV5 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
USP48Q86UV5 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.53□□□□□ -1.52
USP48Q86UV5 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
USP48Q86UV5 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.53□□□□□ -1.52
USP48Q86UV5 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP48Q86UV5 RNU4-44P-201ENST00000363050 141 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 Y_RNA.381-201ENST00000365666 102 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 Z98745.1-201ENST00000402553 494 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms