Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC068050.1-201ENST00000394891 380 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 RPS4XP8-201ENST00000402039 771 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 SNORA11C-201ENST00000408532 129 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC096664.2-201ENST00000411843 406 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 FCF1P2-201ENST00000415284 583 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC004383.1-201ENST00000438135 289 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 NANOGNBP1-201ENST00000448444 480 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 MTCO1P42-201ENST00000457379 726 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 KLF3P2-201ENST00000465138 268 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC093770.1-201ENST00000511559 571 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 RN7SKP132-201ENST00000516001 208 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 RNU6-970P-201ENST00000516312 107 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 MAL2-205ENST00000521048 575 ntTSL 4 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 EIF4EP5-201ENST00000528228 640 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AL354943.1-201ENST00000572103 781 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC090666.1-201ENST00000578241 445 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC006539.2-201ENST00000601729 572 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC025165.5-201ENST00000602802 578 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC120053.1-201ENST00000607706 736 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC005962.2-201ENST00000611427 652 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AL360181.4-201ENST00000621752 134 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 SATB1-AS1-237ENST00000626982 735 ntTSL 5 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 MKKS-204ENST00000639674 192 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
LINC00643Q86TS7 DDX10P1-201ENST00000448545 1933 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 OR4G2P-202ENST00000641004 1759 ntBASIC1.19□□□□□ -2.22
LINC00643Q86TS7 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 SNORA16.1-201ENST00000364597 132 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 C1orf194-202ENST00000369945 534 ntTSL 5 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 MIR490-201ENST00000384865 128 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC019129.1-201ENST00000403786 261 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL512604.1-201ENST00000404812 257 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 RPS3AP24-201ENST00000407896 734 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL161449.1-201ENST00000414531 1199 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC007179.1-201ENST00000415159 438 ntTSL 3 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL365496.1-201ENST00000426885 215 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC091286.1-201ENST00000431233 461 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 USP12PX-201ENST00000432383 1057 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL512661.1-201ENST00000434586 1253 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL358232.1-201ENST00000448030 501 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 RPL23AP15-201ENST00000450202 459 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 OR2AF1P-201ENST00000454899 889 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL359385.1-201ENST00000456509 365 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AP002371.1-201ENST00000463604 433 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC006445.1-201ENST00000491925 405 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 HIGD1AP13-201ENST00000509878 289 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC006445.2-201ENST00000510061 472 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 MRPS36P2-201ENST00000512569 299 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC016065.2-201ENST00000514530 444 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 RNA5SP320-201ENST00000516263 124 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 SNORA31.25-201ENST00000517242 134 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 NPM1P52-201ENST00000518264 846 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 OR8I1P-201ENST00000529291 931 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AP005435.4-201ENST00000529514 284 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC090888.1-201ENST00000561335 1141 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 MIR4299-201ENST00000577899 72 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC022916.3-201ENST00000592961 742 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC106052.1-201ENST00000608029 497 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC003001.2-201ENST00000616294 831 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL449363.1-201ENST00000617815 186 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AL034408.1-202ENST00000636088 415 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 MIR4302-201ENST00000638058 60 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 AC073346.2-201ENST00000624724 2058 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 MTCO1P11-201ENST00000429111 1528 ntBASIC1.18□□□□□ -2.22
LINC00643Q86TS7 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC1.18□□□□□ -2.22
LINC00643Q86TS7 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.17□□□□□ -2.22
LINC00643Q86TS7 AC080128.1-201ENST00000474389 1917 ntBASIC1.17□□□□□ -2.22
LINC00643Q86TS7 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms