Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SNORA31.1-201ENST00000515993 133 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 SNORA31.5-201ENST00000516190 133 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC024224.1-201ENST00000538284 609 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 SETP7-201ENST00000552169 453 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 MIR4637-201ENST00000582405 84 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AC008739.3-201ENST00000603262 127 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 AF129408.1-201ENST00000608767 431 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 OR1S1-201ENST00000624470 978 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 MIR1322-201ENST00000638013 71 ntBASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
CCDC40Q4G0X9 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AL353743.1-202ENST00000431724 1695 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 API5P2-201ENST00000397055 1498 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 CDR1-202ENST00000625883 1485 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 SNORA71.3-201ENST00000362582 128 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 Y_RNA.408-201ENST00000383987 102 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 RNU6-1176P-201ENST00000390955 107 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 RNA5SP274-201ENST00000410484 108 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 RNA5SP344-201ENST00000411081 104 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 LINC01676-201ENST00000420901 410 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AL353678.1-201ENST00000422735 741 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 YME1L1P1-201ENST00000429435 297 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 EZH2P1-201ENST00000431167 291 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 LINC01680-201ENST00000434983 299 ntTSL 2 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC005297.2-201ENST00000450430 606 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 OFD1P3Y-201ENST00000453312 783 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 RNA5SP310-201ENST00000459084 116 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC068724.1-201ENST00000487100 792 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 RN7SL20P-201ENST00000488827 297 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 COX7A2P2-201ENST00000505291 250 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC091163.3-201ENST00000518269 1144 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 OR5AK1P-201ENST00000524837 922 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AP001804.3-201ENST00000525146 880 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 YWHAZP1-201ENST00000556286 722 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC055876.1-202ENST00000567053 138 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 MTND3P13-201ENST00000574391 343 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 MIR5680-201ENST00000577577 84 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 UBL5P2-201ENST00000583788 219 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC009271.1-202ENST00000588803 492 ntTSL 3 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 VN1R83P-201ENST00000595685 445 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC097717.1-250ENST00000608498 273 ntTSL 5 BASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC106028.5-201ENST00000610332 395 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AL392048.1-201ENST00000613946 534 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC084824.4-201ENST00000620106 731 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC004009.2-201ENST00000623016 728 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AC018692.3-201ENST00000623929 123 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 FAM35CP-201ENST00000554755 2470 ntBASIC3.37□□□□□ -1.87
CCDC40Q4G0X9 AP002907.1-201ENST00000606361 1430 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 SNORA7.4-201ENST00000384249 137 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 MIR7-3-201ENST00000384898 110 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 RNA5SP171-201ENST00000391071 115 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 RPL7P25-201ENST00000404151 721 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 RNU2-47P-201ENST00000410649 186 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 RNU4-47P-201ENST00000410876 114 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC019178.2-201ENST00000423595 505 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 USP9YP36-201ENST00000424581 829 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 MTND2P5-201ENST00000432656 1006 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 RNF2P1-201ENST00000442955 1010 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC016696.1-201ENST00000446949 318 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 SUMO2P2-201ENST00000456482 255 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 RN7SL601P-201ENST00000471221 293 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 HSPD1P15-201ENST00000505573 1122 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC096571.1-202ENST00000506634 735 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC113347.3-201ENST00000509113 148 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 HIGD1AP17-201ENST00000554576 276 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 MED28P6-201ENST00000558776 231 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 HSPE1P3-201ENST00000559254 309 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 CCDC58P3-201ENST00000590792 430 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 SATB1-AS1-207ENST00000593741 955 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC106900.2-201ENST00000604994 317 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 ABBA01000935.2-201ENST00000637477 838 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC099654.8-201ENST00000637757 681 ntBASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
CCDC40Q4G0X9 AC103988.1-201ENST00000566382 2177 ntBASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.35□□□□□ -1.87
CCDC40Q4G0X9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms