Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RPL7P54-201ENST00000438336 674 ntBASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 MED6P1-201ENST00000439659 713 ntBASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 RPS7P5-201ENST00000441482 581 ntBASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 OR6C73P-201ENST00000546432 358 ntBASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 AC011933.3-201ENST00000578226 372 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 OR4K7P-201ENST00000580232 945 ntBASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC88AQ3V6T2 RNU1-138P-201ENST00000384093 164 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 LSM5-205ENST00000409952 687 ntTSL 4 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 SCARNA16.3-201ENST00000516595 184 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 C3orf79-201ENST00000623038 580 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 CU459211.1-201ENST00000635667 749 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC013404.1-201ENST00000413068 249 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 PTP4A1P7-201ENST00000423476 514 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC129850.1-201ENST00000436203 508 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 TAF9P1-201ENST00000445421 515 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 TAF9P2-201ENST00000454958 515 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC089999.1-201ENST00000460336 374 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 MTND4LP22-201ENST00000508209 276 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 snoU13.31-201ENST00000607291 104 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 AC138649.5-201ENST00000637456 137 ntBASIC2.6□□□□□ -1.99
CCDC88AQ3V6T2 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 MIR7-2-201ENST00000384970 110 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 RPL26P37-201ENST00000411983 438 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 LUZP4P1-201ENST00000415420 344 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 RPL30P3-201ENST00000424262 333 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 ELOCP6-201ENST00000429066 328 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 RPL23AP33-201ENST00000442301 452 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 AL157827.1-201ENST00000447622 132 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 ELOCP12-201ENST00000458706 328 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 AC005912.1-201ENST00000495392 255 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 RN7SKP82-201ENST00000516786 223 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 OR4T1P-201ENST00000554933 911 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 AC116563.2-201ENST00000624751 535 ntBASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
CCDC88AQ3V6T2 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
CCDC88AQ3V6T2 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
CCDC88AQ3V6T2 THUMPD3P1-201ENST00000506556 1480 ntBASIC2.59□□□□□ -2
CCDC88AQ3V6T2 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 SNORA26.9-201ENST00000391322 122 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 RPL23AP39-201ENST00000415533 405 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC092427.1-202ENST00000430569 476 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC003989.2-201ENST00000440224 169 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 PTP4A1P6-201ENST00000531034 478 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 TRAV11-201ENST00000539512 339 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC034268.2-201ENST00000571784 482 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 PCNAP1-202ENST00000595299 752 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.6-201ENST00000603753 252 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.11-201ENST00000604059 253 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.10-201ENST00000604330 253 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AC008162.1-201ENST00000604718 254 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.1-201ENST00000604752 252 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.2-201ENST00000604983 252 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.5-201ENST00000605253 252 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.4-201ENST00000605279 254 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.12-201ENST00000605291 253 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.8-201ENST00000605353 252 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.9-201ENST00000605428 253 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 AL670379.7-201ENST00000605823 252 ntBASIC2.58□□□□□ -2
CCDC88AQ3V6T2 GMFB-210ENST00000628554 639 ntTSL 4 BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC88AQ3V6T2 ZNF271P-202ENST00000465539 1970 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms