Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNA5SP90-201ENST00000364801 99 ntBASIC4.85□□□□□ -1.63
RNF4P78317 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 Y_RNA.482-201ENST00000384377 111 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RNU6-310P-201ENST00000384655 107 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RNU6-1106P-201ENST00000390845 107 ntBASIC4.85□□□□□ -1.63
RNF4P78317 SNORD70.1-201ENST00000391007 85 ntBASIC4.85□□□□□ -1.63
RNF4P78317 MIR450B-201ENST00000401182 78 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RNA5SP56-201ENST00000410277 118 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RN7SKP126-201ENST00000411143 300 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RNU6-954P-201ENST00000411355 107 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.85□□□□□ -1.63
RNF4P78317 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.85□□□□□ -1.63
RNF4P78317 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC4.85□□□□□ -1.63
RNF4P78317 CALM2P2-201ENST00000428512 440 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RPL19P16-201ENST00000433839 588 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 AF228730.2-201ENST00000438784 848 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RPS29P10-201ENST00000439197 166 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC4.85□□□□□ -1.63
RNF4P78317 AL162388.1-201ENST00000450912 352 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RN7SL189P-201ENST00000468631 289 ntBASIC4.85□□□□□ -1.63
RNF4P78317 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 VN1R105P-201ENST00000486595 910 ntBASIC4.85□□□□□ -1.63
RNF4P78317 COX6B1P2-201ENST00000489624 230 ntBASIC4.85□□□□□ -1.63
RNF4P78317 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 AC008526.1-201ENST00000509149 338 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AC112196.1-201ENST00000515092 832 ntTSL 3 BASIC4.85□□□□□ -1.63
RNF4P78317 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.85□□□□□ -1.63
RNF4P78317 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RN7SKP295-201ENST00000517264 153 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.85□□□□□ -1.63
RNF4P78317 AC093012.1-202ENST00000549403 582 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC4.85□□□□□ -1.63
RNF4P78317 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC4.85□□□□□ -1.63
RNF4P78317 AC008814.1-201ENST00000603797 406 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AC007938.3-201ENST00000604965 623 ntBASIC4.85□□□□□ -1.63
RNF4P78317 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 FAM157A-202ENST00000615155 405 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AC131238.1-201ENST00000617135 328 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 AL359922.3-201ENST00000624779 1670 ntBASIC4.85□□□□□ -1.63
RNF4P78317 AC023421.1-201ENST00000590535 1785 ntBASIC4.85□□□□□ -1.63
RNF4P78317 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC4.85□□□□□ -1.63
RNF4P78317 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
RNF4P78317 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
RNF4P78317 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
RNF4P78317 Z95331.1-201ENST00000623075 23112 ntBASIC4.84□□□□□ -1.63
RNF4P78317 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.84□□□□□ -1.63
RNF4P78317 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
RNF4P78317 THAP12P5-201ENST00000405864 2275 ntBASIC4.84□□□□□ -1.63
RNF4P78317 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
RNF4P78317 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
RNF4P78317 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
RNF4P78317 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
RNF4P78317 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
RNF4P78317 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.84□□□□□ -1.63
RNF4P78317 AC109780.1-201ENST00000451768 1344 ntBASIC4.84□□□□□ -1.63
RNF4P78317 RNU6-178P-201ENST00000384631 104 ntBASIC4.84□□□□□ -1.63
RNF4P78317 MIR105-2-201ENST00000385083 81 ntBASIC4.84□□□□□ -1.63
RNF4P78317 SNORA48.4-201ENST00000391089 134 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AL139397.2-201ENST00000404529 772 ntBASIC4.84□□□□□ -1.63
RNF4P78317 NDUFS5P1-201ENST00000405668 289 ntBASIC4.84□□□□□ -1.63
RNF4P78317 SPTLC1P2-201ENST00000407089 121 ntBASIC4.84□□□□□ -1.63
RNF4P78317 MIR1182-201ENST00000408363 97 ntBASIC4.84□□□□□ -1.63
RNF4P78317 U3.36-201ENST00000408418 213 ntBASIC4.84□□□□□ -1.63
RNF4P78317 Y_RNA.646-201ENST00000410980 101 ntBASIC4.84□□□□□ -1.63
RNF4P78317 DPPA2P3-201ENST00000411853 655 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AL358176.2-201ENST00000425769 204 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AL353148.1-204ENST00000426752 477 ntTSL 5 BASIC4.84□□□□□ -1.63
RNF4P78317 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.84□□□□□ -1.63
RNF4P78317 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.84□□□□□ -1.63
RNF4P78317 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.84□□□□□ -1.63
RNF4P78317 AC104472.2-201ENST00000469035 601 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AP002812.1-201ENST00000495378 474 ntBASIC4.84□□□□□ -1.63
RNF4P78317 FXN-205ENST00000498653 856 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
RNF4P78317 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
RNF4P78317 AC002456.2-201ENST00000509356 380 ntBASIC4.84□□□□□ -1.63
RNF4P78317 RNU6-390P-201ENST00000516259 103 ntBASIC4.84□□□□□ -1.63
RNF4P78317 RANP9-201ENST00000519957 271 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AC103783.1-201ENST00000520506 373 ntBASIC4.84□□□□□ -1.63
RNF4P78317 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.84□□□□□ -1.63
RNF4P78317 RN7SL708P-201ENST00000580952 299 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AC069061.3-201ENST00000582254 823 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AL138889.2-201ENST00000603883 242 ntBASIC4.84□□□□□ -1.63
RNF4P78317 IGHV3-29-201ENST00000604817 344 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AL034351.1-201ENST00000605288 668 ntBASIC4.84□□□□□ -1.63
RNF4P78317 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC4.84□□□□□ -1.63
RNF4P78317 U2.17-201ENST00000611454 95 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AL138726.1-201ENST00000614873 333 ntBASIC4.84□□□□□ -1.63
RNF4P78317 AC090510.2-201ENST00000617465 629 ntBASIC4.84□□□□□ -1.63
RNF4P78317 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms