Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 uc_338.18-201ENST00000615451 175 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC007546.1-201ENST00000619452 559 ntBASIC5.26□□□□□ -1.57
LIG3P49916 AC116667.1-201ENST00000604855 2072 ntBASIC5.26□□□□□ -1.57
LIG3P49916 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 AL672167.1-203ENST00000641299 2975 ntBASIC5.26□□□□□ -1.57
LIG3P49916 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
LIG3P49916 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.26□□□□□ -1.57
LIG3P49916 TPTE2P4-201ENST00000258589 1605 ntBASIC5.26□□□□□ -1.57
LIG3P49916 OR51H2P-202ENST00000641424 3046 ntBASIC5.26□□□□□ -1.57
LIG3P49916 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.25□□□□□ -1.57
LIG3P49916 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.25□□□□□ -1.57
LIG3P49916 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 DDX10P1-201ENST00000448545 1933 ntBASIC5.25□□□□□ -1.57
LIG3P49916 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG3P49916 ZNF33CP-201ENST00000432492 2030 ntBASIC5.25□□□□□ -1.57
LIG3P49916 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 XIAPP3-201ENST00000312918 795 ntBASIC5.25□□□□□ -1.57
LIG3P49916 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG3P49916 SNORD42.2-201ENST00000365570 69 ntBASIC5.25□□□□□ -1.57
LIG3P49916 U3.36-201ENST00000408418 213 ntBASIC5.25□□□□□ -1.57
LIG3P49916 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG3P49916 RPL23AP27-201ENST00000415161 451 ntBASIC5.25□□□□□ -1.57
LIG3P49916 CALM2P2-201ENST00000428512 440 ntBASIC5.25□□□□□ -1.57
LIG3P49916 PTMAP6-201ENST00000439110 327 ntBASIC5.25□□□□□ -1.57
LIG3P49916 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG3P49916 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.25□□□□□ -1.57
LIG3P49916 SFTA1P-203ENST00000446372 693 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 AC073587.1-201ENST00000447093 876 ntBASIC5.25□□□□□ -1.57
LIG3P49916 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.25□□□□□ -1.57
LIG3P49916 Y_RNA.639-201ENST00000458981 102 ntBASIC5.25□□□□□ -1.57
LIG3P49916 AC008481.1-201ENST00000463278 396 ntBASIC5.25□□□□□ -1.57
LIG3P49916 RPSAP50-201ENST00000481955 852 ntBASIC5.25□□□□□ -1.57
LIG3P49916 RPS24P16-201ENST00000497294 392 ntBASIC5.25□□□□□ -1.57
LIG3P49916 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG3P49916 RPL39P5-202ENST00000512505 151 ntBASIC5.25□□□□□ -1.57
LIG3P49916 AC026801.2-201ENST00000515352 425 ntBASIC5.25□□□□□ -1.57
LIG3P49916 RNU6-273P-201ENST00000516937 96 ntBASIC5.25□□□□□ -1.57
LIG3P49916 Y_RNA.718-201ENST00000517110 102 ntBASIC5.25□□□□□ -1.57
LIG3P49916 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.25□□□□□ -1.57
LIG3P49916 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.25□□□□□ -1.57
LIG3P49916 HMGN2P6-201ENST00000551091 273 ntBASIC5.25□□□□□ -1.57
LIG3P49916 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC5.25□□□□□ -1.57
LIG3P49916 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.25□□□□□ -1.57
LIG3P49916 TUG1_2.1-201ENST00000614234 87 ntBASIC5.25□□□□□ -1.57
LIG3P49916 AC084781.2-201ENST00000615568 161 ntBASIC5.25□□□□□ -1.57
LIG3P49916 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.25□□□□□ -1.57
LIG3P49916 MTND4LP32-201ENST00000636111 270 ntBASIC5.25□□□□□ -1.57
LIG3P49916 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
LIG3P49916 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
LIG3P49916 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
LIG3P49916 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC5.25□□□□□ -1.57
LIG3P49916 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
LIG3P49916 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG3P49916 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
LIG3P49916 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.24□□□□□ -1.57
LIG3P49916 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
LIG3P49916 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 RNU1-94P-201ENST00000362627 173 ntBASIC5.24□□□□□ -1.57
LIG3P49916 U3.3-201ENST00000362986 216 ntBASIC5.24□□□□□ -1.57
LIG3P49916 RNU1-106P-201ENST00000384382 164 ntBASIC5.24□□□□□ -1.57
LIG3P49916 SNORD116-29-201ENST00000384516 83 ntBASIC5.24□□□□□ -1.57
LIG3P49916 MIR606-201ENST00000384851 96 ntBASIC5.24□□□□□ -1.57
LIG3P49916 MIR559-201ENST00000385188 96 ntBASIC5.24□□□□□ -1.57
LIG3P49916 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
LIG3P49916 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
LIG3P49916 MIR548F5-201ENST00000408421 86 ntBASIC5.24□□□□□ -1.57
LIG3P49916 RN7SKP213-201ENST00000410746 298 ntBASIC5.24□□□□□ -1.57
LIG3P49916 VN1R36P-201ENST00000414936 291 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG3P49916 AL137014.1-201ENST00000420490 1226 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC005517.2-201ENST00000424673 553 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AL138785.1-201ENST00000425821 331 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC093106.2-201ENST00000428212 385 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG3P49916 AL162389.1-201ENST00000449233 177 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG3P49916 Y_RNA.631-201ENST00000459607 101 ntBASIC5.24□□□□□ -1.57
LIG3P49916 RPL21P8-201ENST00000465083 535 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC108751.2-201ENST00000469993 231 ntBASIC5.24□□□□□ -1.57
LIG3P49916 BX284632.1-201ENST00000478218 541 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC022133.1-201ENST00000490961 571 ntBASIC5.24□□□□□ -1.57
LIG3P49916 RPL7P23-201ENST00000493874 747 ntBASIC5.24□□□□□ -1.57
LIG3P49916 RN7SL808P-201ENST00000496066 299 ntBASIC5.24□□□□□ -1.57
LIG3P49916 TRBVA-201ENST00000498804 316 ntBASIC5.24□□□□□ -1.57
LIG3P49916 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.24□□□□□ -1.57
LIG3P49916 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.24□□□□□ -1.57
LIG3P49916 RNA5SP360-201ENST00000516555 118 ntBASIC5.24□□□□□ -1.57
LIG3P49916 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.24□□□□□ -1.57
LIG3P49916 AC022360.1-201ENST00000521058 340 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 89.7 ms