Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.17□□□□□ -1.74
CTCFP49711 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CTCFP49711 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.17□□□□□ -1.74
CTCFP49711 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC4.17□□□□□ -1.74
CTCFP49711 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.17□□□□□ -1.74
CTCFP49711 AC004024.1-201ENST00000549244 247 ntBASIC4.17□□□□□ -1.74
CTCFP49711 MRPS36P5-201ENST00000551909 298 ntBASIC4.17□□□□□ -1.74
CTCFP49711 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC4.17□□□□□ -1.74
CTCFP49711 AC012170.2-201ENST00000560380 667 ntTSL 3 BASIC4.17□□□□□ -1.74
CTCFP49711 AC012182.1-201ENST00000570133 895 ntBASIC4.17□□□□□ -1.74
CTCFP49711 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC4.17□□□□□ -1.74
CTCFP49711 MAGOH2P-202ENST00000584384 429 ntBASIC4.17□□□□□ -1.74
CTCFP49711 VN1R90P-201ENST00000595717 726 ntBASIC4.17□□□□□ -1.74
CTCFP49711 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.17□□□□□ -1.74
CTCFP49711 AL360219.1-201ENST00000610230 366 ntBASIC4.17□□□□□ -1.74
CTCFP49711 AL136981.2-201ENST00000617319 734 ntBASIC4.17□□□□□ -1.74
CTCFP49711 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
CTCFP49711 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.17□□□□□ -1.74
CTCFP49711 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
CTCFP49711 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.17□□□□□ -1.74
CTCFP49711 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CTCFP49711 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
CTCFP49711 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.16□□□□□ -1.74
CTCFP49711 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CTCFP49711 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC4.16□□□□□ -1.74
CTCFP49711 OR4G11P-202ENST00000642116 1414 ntBASIC4.16□□□□□ -1.74
CTCFP49711 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CTCFP49711 RNU6-1200P-201ENST00000384162 107 ntBASIC4.16□□□□□ -1.74
CTCFP49711 MT-TC-201ENST00000387405 66 ntBASIC4.16□□□□□ -1.74
CTCFP49711 RNU6-837P-201ENST00000391056 108 ntBASIC4.16□□□□□ -1.74
CTCFP49711 DHFRP6-201ENST00000401776 268 ntBASIC4.16□□□□□ -1.74
CTCFP49711 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.16□□□□□ -1.74
CTCFP49711 AC098592.1-201ENST00000419352 333 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AC011233.1-201ENST00000422812 283 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AL049610.1-201ENST00000423374 372 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AL022400.1-201ENST00000423946 935 ntBASIC4.16□□□□□ -1.74
CTCFP49711 MTND4P6-201ENST00000438297 472 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AL354941.1-201ENST00000438600 464 ntBASIC4.16□□□□□ -1.74
CTCFP49711 MTND5P2-201ENST00000442927 1142 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AL513124.1-201ENST00000450410 614 ntBASIC4.16□□□□□ -1.74
CTCFP49711 FDX1P2-201ENST00000450769 375 ntBASIC4.16□□□□□ -1.74
CTCFP49711 USP9YP10-201ENST00000454868 628 ntBASIC4.16□□□□□ -1.74
CTCFP49711 RPS3AP22-201ENST00000488297 769 ntBASIC4.16□□□□□ -1.74
CTCFP49711 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.16□□□□□ -1.74
CTCFP49711 NIPA2P2-201ENST00000496376 1083 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC4.16□□□□□ -1.74
CTCFP49711 AC093281.2-201ENST00000510153 597 ntBASIC4.16□□□□□ -1.74
CTCFP49711 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC4.16□□□□□ -1.74
CTCFP49711 Y_RNA.676-201ENST00000516393 96 ntBASIC4.16□□□□□ -1.74
CTCFP49711 HSPA8P13-201ENST00000523715 472 ntBASIC4.16□□□□□ -1.74
CTCFP49711 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC4.16□□□□□ -1.74
CTCFP49711 ELOCP32-201ENST00000548625 324 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.16□□□□□ -1.74
CTCFP49711 RPL23AP92-201ENST00000603609 255 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AC025811.1-201ENST00000604312 472 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AC018638.7-201ENST00000605836 1114 ntBASIC4.16□□□□□ -1.74
CTCFP49711 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC4.16□□□□□ -1.74
CTCFP49711 AC087241.4-201ENST00000612441 480 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AC025588.4-201ENST00000615802 908 ntBASIC4.16□□□□□ -1.74
CTCFP49711 U7.8-201ENST00000619968 63 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AL607023.1-201ENST00000620045 248 ntBASIC4.16□□□□□ -1.74
CTCFP49711 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CTCFP49711 AC231657.1-201ENST00000624313 397 ntBASIC4.16□□□□□ -1.74
CTCFP49711 AC010149.2-201ENST00000637608 315 ntBASIC4.16□□□□□ -1.74
CTCFP49711 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.16□□□□□ -1.74
CTCFP49711 MUC7-201ENST00000304887 2443 ntAPPRIS P2 TSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CTCFP49711 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.15□□□□□ -1.74
CTCFP49711 NUP58P1-201ENST00000502546 1738 ntBASIC4.15□□□□□ -1.74
CTCFP49711 AC010733.2-201ENST00000589496 5702 ntBASIC4.15□□□□□ -1.74
CTCFP49711 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.15□□□□□ -1.74
CTCFP49711 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
CTCFP49711 SPINK1-201ENST00000296695 542 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
CTCFP49711 RNU6-989P-201ENST00000362756 107 ntBASIC4.15□□□□□ -1.75
CTCFP49711 RNVU1-3-201ENST00000364313 161 ntBASIC4.15□□□□□ -1.75
CTCFP49711 Y_RNA.493-201ENST00000384422 102 ntBASIC4.15□□□□□ -1.75
CTCFP49711 MIR607-201ENST00000385241 96 ntBASIC4.15□□□□□ -1.75
CTCFP49711 RNA5SP56-201ENST00000410277 118 ntBASIC4.15□□□□□ -1.75
CTCFP49711 RNU2-37P-201ENST00000410695 177 ntBASIC4.15□□□□□ -1.75
CTCFP49711 AL353678.1-201ENST00000422735 741 ntBASIC4.15□□□□□ -1.75
CTCFP49711 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC4.15□□□□□ -1.75
CTCFP49711 RPL23AP74-201ENST00000437246 471 ntBASIC4.15□□□□□ -1.75
CTCFP49711 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC4.15□□□□□ -1.75
CTCFP49711 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC4.15□□□□□ -1.75
CTCFP49711 ART2BP-201ENST00000453501 499 ntBASIC4.15□□□□□ -1.75
CTCFP49711 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC4.15□□□□□ -1.75
CTCFP49711 CEACAMP4-201ENST00000457676 421 ntBASIC4.15□□□□□ -1.75
CTCFP49711 SYPL1P1-201ENST00000473622 768 ntBASIC4.15□□□□□ -1.75
CTCFP49711 AP001086.1-201ENST00000494882 321 ntBASIC4.15□□□□□ -1.75
CTCFP49711 AC090453.1-201ENST00000495560 436 ntBASIC4.15□□□□□ -1.75
CTCFP49711 MRPS33P3-201ENST00000513456 322 ntBASIC4.15□□□□□ -1.75
CTCFP49711 AC024958.1-201ENST00000519364 902 ntTSL 5 BASIC4.15□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms