Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AL590623.1-201ENST00000427864 105 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC236972.1-201ENST00000433225 199 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC129850.1-201ENST00000436203 508 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 RPS26P30-201ENST00000443431 335 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 CACYBPP2-201ENST00000453625 678 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AL031183.1-201ENST00000457667 207 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 GTPBP8-205ENST00000473129 1518 ntTSL 2 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 UBE2DNL-203ENST00000474922 222 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 RPS4XP6-201ENST00000477670 797 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC004924.1-201ENST00000480160 781 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
HLA-DMBP28068 HIGD1AP13-201ENST00000509878 289 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 TBCAP3-201ENST00000512475 312 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
HLA-DMBP28068 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
HLA-DMBP28068 HMGB1P41-201ENST00000520234 440 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC079600.2-201ENST00000550076 130 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AL355836.1-201ENST00000555951 870 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 CASC16-202ENST00000563844 610 ntTSL 3 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
HLA-DMBP28068 ATP5F1P7-201ENST00000567330 760 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC074051.3-201ENST00000570238 358 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 MIR4635-201ENST00000583759 79 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC106791.2-201ENST00000604680 391 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AC007275.1-201ENST00000621243 671 ntBASIC2.04□□□□□ -2.08
HLA-DMBP28068 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 FLG-AS1-207ENST00000628475 497 ntTSL 5 BASIC2.04□□□□□ -2.08
HLA-DMBP28068 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC099654.7-201ENST00000635788 2127 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 MTND5P11-201ENST00000511037 1812 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 MTCO1P6-201ENST00000481192 1384 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AL513185.3-201ENST00000433335 1300 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AL672167.1-206ENST00000356293 943 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 SNORA25.6-201ENST00000364121 118 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 DEFA7P-201ENST00000382676 285 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 STAT4-203ENST00000409995 709 ntTSL 5 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 BOLA3P4-201ENST00000418151 400 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC233981.1-201ENST00000423224 461 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 TPTE2P1-204ENST00000435256 593 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AL109741.2-201ENST00000455561 343 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AL359385.1-201ENST00000456509 365 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC073901.1-201ENST00000462471 408 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 CABYRP1-201ENST00000465493 1045 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 VPS26AP1-201ENST00000483197 979 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 MLLT10P2-201ENST00000506434 249 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC104108.1-201ENST00000509930 412 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 RNA5SP356-201ENST00000515972 94 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC027309.2-201ENST00000520566 192 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC100870.1-201ENST00000522035 505 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC008114.1-201ENST00000544122 427 ntTSL 2 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC007954.1-201ENST00000554198 494 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC060766.3-201ENST00000591442 263 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC020895.1-201ENST00000595362 272 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 VN1R90P-201ENST00000595717 726 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC106900.2-201ENST00000604994 317 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AP004247.3-201ENST00000608682 624 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AP001033.2-201ENST00000609701 1003 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AP006248.3-201ENST00000623580 594 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC098679.5-201ENST00000624394 571 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.03□□□□□ -2.08
HLA-DMBP28068 BX649567.1-201ENST00000642071 1134 ntBASIC2.03□□□□□ -2.08
HLA-DMBP28068 AC138915.1-201ENST00000565427 1685 ntBASIC2.02□□□□□ -2.09
HLA-DMBP28068 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HLA-DMBP28068 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.02□□□□□ -2.09
HLA-DMBP28068 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
HLA-DMBP28068 AC111188.2-201ENST00000529697 1387 ntBASIC2.02□□□□□ -2.09
HLA-DMBP28068 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
HLA-DMBP28068 ANKRD36P1-201ENST00000344424 659 ntBASIC2.02□□□□□ -2.09
HLA-DMBP28068 RNU5D-1-201ENST00000363299 116 ntBASIC2.02□□□□□ -2.09
HLA-DMBP28068 AL356057.3-201ENST00000402607 340 ntBASIC2.02□□□□□ -2.09
HLA-DMBP28068 AL138827.1-201ENST00000402666 306 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms