Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC3□□□□□ -1.93
SDC1P18827 LINC02122-201ENST00000511395 577 ntTSL 4 BASIC3□□□□□ -1.93
SDC1P18827 SAP18P1-201ENST00000512058 390 ntBASIC3□□□□□ -1.93
SDC1P18827 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3□□□□□ -1.93
SDC1P18827 RNU6-1095P-201ENST00000516148 108 ntBASIC3□□□□□ -1.93
SDC1P18827 OR5AK1P-201ENST00000524837 922 ntBASIC3□□□□□ -1.93
SDC1P18827 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC3□□□□□ -1.93
SDC1P18827 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3□□□□□ -1.93
SDC1P18827 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3□□□□□ -1.93
SDC1P18827 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3□□□□□ -1.93
SDC1P18827 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3□□□□□ -1.93
SDC1P18827 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3□□□□□ -1.93
SDC1P18827 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3□□□□□ -1.93
SDC1P18827 SETP7-201ENST00000552169 453 ntBASIC3□□□□□ -1.93
SDC1P18827 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3□□□□□ -1.93
SDC1P18827 CKS1BP3-201ENST00000600888 237 ntBASIC3□□□□□ -1.93
SDC1P18827 AC006270.3-201ENST00000605967 1036 ntBASIC3□□□□□ -1.93
SDC1P18827 AC006927.4-201ENST00000639187 543 ntBASIC3□□□□□ -1.93
SDC1P18827 ZNF876P-202ENST00000398732 1485 ntBASIC3□□□□□ -1.93
SDC1P18827 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3□□□□□ -1.93
SDC1P18827 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3□□□□□ -1.93
SDC1P18827 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3□□□□□ -1.93
SDC1P18827 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3□□□□□ -1.93
SDC1P18827 OR4G11P-202ENST00000642116 1414 ntBASIC3□□□□□ -1.93
SDC1P18827 AC097714.1-201ENST00000511272 1647 ntBASIC3□□□□□ -1.93
SDC1P18827 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3□□□□□ -1.93
SDC1P18827 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC3□□□□□ -1.93
SDC1P18827 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SDC1P18827 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SDC1P18827 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC2.99□□□□□ -1.93
SDC1P18827 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SDC1P18827 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SDC1P18827 RPL23AP57-201ENST00000332361 466 ntBASIC2.99□□□□□ -1.93
SDC1P18827 RNU6-343P-201ENST00000364709 104 ntBASIC2.99□□□□□ -1.93
SDC1P18827 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
SDC1P18827 RNU6-1074P-201ENST00000383995 104 ntBASIC2.99□□□□□ -1.93
SDC1P18827 SNORA48.8-201ENST00000391324 134 ntBASIC2.99□□□□□ -1.93
SDC1P18827 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SDC1P18827 AL357075.1-201ENST00000404107 726 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 MTATP6P27-201ENST00000416987 621 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
SDC1P18827 MTCO2P17-201ENST00000424336 677 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 AL159987.2-201ENST00000432754 307 ntBASIC2.99□□□□□ -1.93
SDC1P18827 MTCYBP45-201ENST00000435243 565 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 HMGB1P12-201ENST00000438594 598 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC108734.1-201ENST00000439549 399 ntBASIC2.99□□□□□ -1.93
SDC1P18827 HSPE1P28-201ENST00000443139 211 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC093422.2-201ENST00000452599 686 ntTSL 2 BASIC2.99□□□□□ -1.93
SDC1P18827 HMGB1P15-201ENST00000453854 435 ntBASIC2.99□□□□□ -1.93
SDC1P18827 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 FAM133DP-201ENST00000464802 691 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AL024509.2-201ENST00000493462 493 ntBASIC2.99□□□□□ -1.93
SDC1P18827 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 COX7A2P2-201ENST00000505291 250 ntBASIC2.99□□□□□ -1.93
SDC1P18827 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 AC004062.1-201ENST00000509926 645 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC2.99□□□□□ -1.93
SDC1P18827 AC087362.1-201ENST00000527912 434 ntTSL 5 BASIC2.99□□□□□ -1.93
SDC1P18827 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC2.99□□□□□ -1.93
SDC1P18827 AC018630.1-201ENST00000541376 925 ntBASIC2.99□□□□□ -1.93
SDC1P18827 MTND1P24-201ENST00000552175 861 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC011611.1-201ENST00000552179 197 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 OR4H12P-201ENST00000556269 907 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 AC053481.3-201ENST00000577881 843 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC022145.1-201ENST00000600673 383 ntTSL 3 BASIC2.99□□□□□ -1.93
SDC1P18827 AL158042.1-201ENST00000605338 460 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AL390208.1-201ENST00000605885 644 ntBASIC2.99□□□□□ -1.93
SDC1P18827 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC2.99□□□□□ -1.93
SDC1P18827 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AL161637.1-201ENST00000622380 412 ntBASIC2.99□□□□□ -1.93
SDC1P18827 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
SDC1P18827 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
SDC1P18827 AL022578.1-201ENST00000439330 1433 ntBASIC2.99□□□□□ -1.93
SDC1P18827 AC093831.2-201ENST00000624393 3427 ntBASIC2.98□□□□□ -1.93
SDC1P18827 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
SDC1P18827 SNORA62.3-201ENST00000365110 153 ntBASIC2.98□□□□□ -1.93
SDC1P18827 RNU6-952P-201ENST00000391164 108 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AL031679.1-201ENST00000400616 525 ntBASIC2.98□□□□□ -1.93
SDC1P18827 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC1P18827 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC2.98□□□□□ -1.93
SDC1P18827 RNU6-757P-201ENST00000410334 100 ntBASIC2.98□□□□□ -1.93
SDC1P18827 RNU2-47P-201ENST00000410649 186 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AL008987.1-201ENST00000415528 237 ntBASIC2.98□□□□□ -1.93
SDC1P18827 MTCYBP38-201ENST00000417160 1123 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AL589946.1-201ENST00000421465 420 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC1P18827 AL953862.1-201ENST00000423016 168 ntBASIC2.98□□□□□ -1.93
SDC1P18827 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
SDC1P18827 GCA-203ENST00000429691 824 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC1P18827 AL353705.1-201ENST00000433468 480 ntBASIC2.98□□□□□ -1.93
SDC1P18827 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC1P18827 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC2.98□□□□□ -1.93
SDC1P18827 AL662791.1-201ENST00000441992 928 ntBASIC2.98□□□□□ -1.93
SDC1P18827 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC2.98□□□□□ -1.93
SDC1P18827 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC2.98□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms