Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RPS15AP36-201ENST00000492022 382 ntBASIC1.9□□□□□ -2.11
VCANP13611 AC034222.1-201ENST00000494052 532 ntBASIC1.9□□□□□ -2.11
VCANP13611 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC1.9□□□□□ -2.11
VCANP13611 AC098848.2-201ENST00000588023 330 ntBASIC1.9□□□□□ -2.11
VCANP13611 AC110741.2-201ENST00000605278 268 ntBASIC1.9□□□□□ -2.11
VCANP13611 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
VCANP13611 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC1.89□□□□□ -2.11
VCANP13611 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC1.89□□□□□ -2.11
VCANP13611 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC1.89□□□□□ -2.11
VCANP13611 AF131216.2-201ENST00000512316 564 ntBASIC1.89□□□□□ -2.11
VCANP13611 AC007536.1-201ENST00000533382 349 ntBASIC1.89□□□□□ -2.11
VCANP13611 MIR98-201ENST00000606724 119 ntBASIC1.89□□□□□ -2.11
VCANP13611 AP006248.2-201ENST00000623309 592 ntBASIC1.89□□□□□ -2.11
VCANP13611 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
VCANP13611 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
VCANP13611 C2orf73-202ENST00000398634 1921 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
VCANP13611 ZNF720P1-201ENST00000562403 1939 ntBASIC1.89□□□□□ -2.11
VCANP13611 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
VCANP13611 AC012498.1-201ENST00000424037 437 ntBASIC1.89□□□□□ -2.11
VCANP13611 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC1.89□□□□□ -2.11
VCANP13611 AC011979.1-201ENST00000472300 483 ntBASIC1.89□□□□□ -2.11
VCANP13611 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
VCANP13611 AC022336.2-201ENST00000568966 2538 ntBASIC1.89□□□□□ -2.11
VCANP13611 AP001148.1-201ENST00000624124 2359 ntBASIC1.89□□□□□ -2.11
VCANP13611 DEFA7P-201ENST00000382676 285 ntBASIC1.89□□□□□ -2.11
VCANP13611 RAC1P3-201ENST00000416129 580 ntBASIC1.89□□□□□ -2.11
VCANP13611 AC027124.2-201ENST00000428249 105 ntBASIC1.89□□□□□ -2.11
VCANP13611 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC1.89□□□□□ -2.11
VCANP13611 AC079776.3-201ENST00000450665 370 ntBASIC1.89□□□□□ -2.11
VCANP13611 AIG1P1-201ENST00000503376 148 ntBASIC1.89□□□□□ -2.11
VCANP13611 MIR1273G-201ENST00000577677 100 ntBASIC1.89□□□□□ -2.11
VCANP13611 CDC27P3-201ENST00000635418 1910 ntBASIC1.88□□□□□ -2.11
VCANP13611 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC1.88□□□□□ -2.11
VCANP13611 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.88□□□□□ -2.11
VCANP13611 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
VCANP13611 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC1.88□□□□□ -2.11
VCANP13611 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
VCANP13611 SNORA51.4-201ENST00000364993 124 ntBASIC1.88□□□□□ -2.11
VCANP13611 RNU1-51P-201ENST00000365345 176 ntBASIC1.88□□□□□ -2.11
VCANP13611 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC1.88□□□□□ -2.11
VCANP13611 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.88□□□□□ -2.11
VCANP13611 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC1.88□□□□□ -2.11
VCANP13611 MTCYBP17-201ENST00000503579 789 ntBASIC1.88□□□□□ -2.11
VCANP13611 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC1.88□□□□□ -2.11
VCANP13611 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
VCANP13611 AC026523.2-201ENST00000625039 7739 ntBASIC1.88□□□□□ -2.11
VCANP13611 PCF11-AS1-201ENST00000602322 1516 ntBASIC1.88□□□□□ -2.11
VCANP13611 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC1.88□□□□□ -2.11
VCANP13611 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
VCANP13611 LRRC6-212ENST00000618342 1754 ntAPPRIS ALT1 TSL 5 BASIC1.88□□□□□ -2.11
VCANP13611 CBWD4P-201ENST00000445695 655 ntBASIC1.87□□□□□ -2.11
VCANP13611 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC1.87□□□□□ -2.11
VCANP13611 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.87□□□□□ -2.11
VCANP13611 MIR6788-201ENST00000618842 66 ntBASIC1.87□□□□□ -2.11
VCANP13611 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC1.87□□□□□ -2.11
VCANP13611 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC1.87□□□□□ -2.11
VCANP13611 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
VCANP13611 RNA5SP62-201ENST00000363457 110 ntBASIC1.87□□□□□ -2.11
VCANP13611 AC234781.4-201ENST00000419384 244 ntBASIC1.87□□□□□ -2.11
VCANP13611 RN7SL274P-201ENST00000492268 272 ntBASIC1.87□□□□□ -2.11
VCANP13611 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC1.87□□□□□ -2.11
VCANP13611 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC1.87□□□□□ -2.11
VCANP13611 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC1.87□□□□□ -2.11
VCANP13611 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC1.87□□□□□ -2.11
VCANP13611 WDR61-205ENST00000558459 884 ntTSL 3 BASIC1.87□□□□□ -2.11
VCANP13611 MTATP6P3-201ENST00000581686 676 ntBASIC1.87□□□□□ -2.11
VCANP13611 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
VCANP13611 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.87□□□□□ -2.11
VCANP13611 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC1.87□□□□□ -2.11
VCANP13611 AC087854.1-201ENST00000519706 414 ntBASIC1.87□□□□□ -2.11
VCANP13611 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC1.87□□□□□ -2.11
VCANP13611 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC1.87□□□□□ -2.11
VCANP13611 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.87□□□□□ -2.11
VCANP13611 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC1.86□□□□□ -2.11
VCANP13611 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
VCANP13611 AC023128.2-201ENST00000420880 1223 ntBASIC1.86□□□□□ -2.11
VCANP13611 AL138785.1-201ENST00000425821 331 ntBASIC1.86□□□□□ -2.11
VCANP13611 AP003170.4-201ENST00000543486 586 ntTSL 3 BASIC1.86□□□□□ -2.11
VCANP13611 AC099654.11-201ENST00000638857 294 ntBASIC1.86□□□□□ -2.11
VCANP13611 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
VCANP13611 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC1.86□□□□□ -2.11
VCANP13611 Y_RNA.303-201ENST00000364998 94 ntBASIC1.86□□□□□ -2.11
VCANP13611 Z98749.2-208ENST00000381646 500 ntBASIC1.86□□□□□ -2.11
VCANP13611 MTND1P18-201ENST00000448191 573 ntBASIC1.86□□□□□ -2.11
VCANP13611 AP000852.1-201ENST00000472460 573 ntBASIC1.86□□□□□ -2.11
VCANP13611 AC114801.2-201ENST00000503825 781 ntBASIC1.86□□□□□ -2.11
VCANP13611 AC109464.2-201ENST00000510242 943 ntBASIC1.86□□□□□ -2.11
VCANP13611 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.86□□□□□ -2.11
VCANP13611 AC006023.2-201ENST00000609916 167 ntBASIC1.86□□□□□ -2.11
VCANP13611 AC025016.1-201ENST00000616746 682 ntBASIC1.86□□□□□ -2.11
VCANP13611 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC1.86□□□□□ -2.11
VCANP13611 NUP58P1-201ENST00000502546 1738 ntBASIC1.86□□□□□ -2.11
VCANP13611 RNU4-44P-201ENST00000363050 141 ntBASIC1.85□□□□□ -2.11
VCANP13611 SNORD88.1-201ENST00000408684 91 ntBASIC1.85□□□□□ -2.11
VCANP13611 AC005534.2-201ENST00000431047 433 ntBASIC1.85□□□□□ -2.11
VCANP13611 GZMAP1-201ENST00000503054 631 ntBASIC1.85□□□□□ -2.11
VCANP13611 TTC39CP1-201ENST00000512513 755 ntBASIC1.85□□□□□ -2.11
VCANP13611 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC1.85□□□□□ -2.11
VCANP13611 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC1.85□□□□□ -2.11
VCANP13611 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms