Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC00704-202ENST00000443994 418 ntTSL 2 BASIC4.96□□□□□ -1.62
COL6A1P12109 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A1P12109 BTF3P6-201ENST00000448054 499 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A1P12109 RNU6-420P-201ENST00000458780 107 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AC026410.2-201ENST00000460281 156 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A1P12109 VN1R105P-201ENST00000486595 910 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 RPL39P36-201ENST00000490784 156 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 TMEM251P1-201ENST00000503717 318 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 NPM1P41-201ENST00000512920 831 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 FTH1P9-201ENST00000513251 355 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AC018797.3-201ENST00000513388 1241 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 RNU4-60P-201ENST00000517239 135 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AP003181.2-201ENST00000528941 181 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AC008127.2-201ENST00000549925 1075 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC4.96□□□□□ -1.62
COL6A1P12109 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.96□□□□□ -1.62
COL6A1P12109 AC099489.2-201ENST00000574976 260 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AC015917.1-201ENST00000579654 510 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 MAGOH2P-202ENST00000584384 429 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 ACTR3BP1-201ENST00000605584 1247 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AC135507.2-201ENST00000612443 309 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 YWHAEP7-203ENST00000622054 312 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 AC010149.2-201ENST00000637608 315 ntBASIC4.96□□□□□ -1.62
COL6A1P12109 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
COL6A1P12109 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.96□□□□□ -1.62
COL6A1P12109 SMG1P4-204ENST00000523028 4131 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A1P12109 AL391684.1-202ENST00000641293 1636 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
COL6A1P12109 RNU6-845P-201ENST00000362578 103 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 RNU6-282P-201ENST00000365357 103 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 RNU6-952P-201ENST00000391164 108 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 RPL23AP32-201ENST00000395315 459 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 RPL7P25-201ENST00000404151 721 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AL590004.1-201ENST00000405321 300 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
COL6A1P12109 CTSL3P-202ENST00000412179 788 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC4.95□□□□□ -1.62
COL6A1P12109 TPMTP2-201ENST00000414372 726 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 SNRPFP1-201ENST00000414761 252 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AL353193.1-201ENST00000421444 268 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 GTF2IP20-201ENST00000431663 360 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 RPL23AP52-201ENST00000439311 478 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AL162151.2-201ENST00000448875 158 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A1P12109 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC4.95□□□□□ -1.62
COL6A1P12109 AC104563.1-201ENST00000476147 376 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC4.95□□□□□ -1.62
COL6A1P12109 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A1P12109 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A1P12109 HIGD1AP3-201ENST00000515857 278 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 RNU6-201P-201ENST00000517100 61 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 COX6CP8-201ENST00000522620 226 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A1P12109 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC4.95□□□□□ -1.62
COL6A1P12109 AC007424.1-203ENST00000554613 687 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC4.95□□□□□ -1.62
COL6A1P12109 CYCSP40-201ENST00000575927 294 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC4.95□□□□□ -1.62
COL6A1P12109 SNORD39.3-201ENST00000584451 71 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 AC068722.2-201ENST00000618734 544 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.95□□□□□ -1.62
COL6A1P12109 AP001642.1-201ENST00000624727 2117 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC4.95□□□□□ -1.62
COL6A1P12109 PABPC1P7-201ENST00000413177 1513 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.95□□□□□ -1.62
COL6A1P12109 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A1P12109 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
COL6A1P12109 LINC00622-201ENST00000562811 1570 ntBASIC4.95□□□□□ -1.62
COL6A1P12109 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A1P12109 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A1P12109 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A1P12109 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
COL6A1P12109 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL6A1P12109 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.94□□□□□ -1.62
COL6A1P12109 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A1P12109 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 CKAP2P1-201ENST00000555477 2049 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A1P12109 Y_RNA.157-201ENST00000363638 102 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 Y_RNA.162-201ENST00000363683 102 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 MIR3065-201ENST00000390137 79 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL6A1P12109 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.94□□□□□ -1.62
COL6A1P12109 RPL7P2-201ENST00000427639 268 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A1P12109 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC4.94□□□□□ -1.62
COL6A1P12109 USP9YP7-201ENST00000436723 430 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC4.94□□□□□ -1.62
COL6A1P12109 MTND1P18-201ENST00000448191 573 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.94□□□□□ -1.62
COL6A1P12109 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC4.94□□□□□ -1.62
COL6A1P12109 USP9YP32-201ENST00000452432 430 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 RPS20P32-201ENST00000456044 356 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 MTCO3P2-201ENST00000457365 171 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 RPL7P22-201ENST00000466005 733 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 AC146944.2-203ENST00000502493 354 ntBASIC4.94□□□□□ -1.62
COL6A1P12109 MTND5P5-201ENST00000503764 376 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms