Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC244100.1-202ENST00000621554 382 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 AL008636.1-201ENST00000625038 1018 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 BDP1P-201ENST00000582658 1990 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 STK31-205ENST00000433467 3085 ntTSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
LMX1BO60663 PNPT1P2-201ENST00000456768 2050 ntBASIC3.47□□□□□ -1.85
LMX1BO60663 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
LMX1BO60663 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.47□□□□□ -1.85
LMX1BO60663 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
LMX1BO60663 AL592437.2-201ENST00000421655 2434 ntBASIC3.46□□□□□ -1.85
LMX1BO60663 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.46□□□□□ -1.85
LMX1BO60663 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC3.46□□□□□ -1.85
LMX1BO60663 AC009229.4-201ENST00000623854 1947 ntBASIC3.46□□□□□ -1.85
LMX1BO60663 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 XPOTP1-201ENST00000443317 2398 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 MDM2-207ENST00000360430 891 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 RNA5SP391-201ENST00000363456 119 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 MIR449B-201ENST00000384995 97 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 RNU6-780P-201ENST00000391030 104 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 RPS3AP36-201ENST00000398190 775 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 MIR320C1-201ENST00000408566 88 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 CRYBB2P1-203ENST00000415709 538 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 RPS3AP9-201ENST00000417027 792 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 MTCYBP24-201ENST00000420387 1106 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 RWDD4P2-201ENST00000426392 563 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 TRIM60P3Y-201ENST00000432201 673 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 KCTD9P3-201ENST00000434597 1169 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AL356276.2-201ENST00000435919 558 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 TBCAP1-201ENST00000436520 327 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 SNRPEP7-201ENST00000438350 220 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 RPL23AP16-201ENST00000441715 421 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 AL133547.1-201ENST00000448546 220 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 GAS5-223ENST00000452197 483 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC3.46□□□□□ -1.86
LMX1BO60663 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.46□□□□□ -1.86
LMX1BO60663 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 RPL7P15-201ENST00000461190 712 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 AC110792.1-201ENST00000491826 472 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 RPL30P11-201ENST00000495304 339 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC090453.1-201ENST00000495560 436 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC019235.1-201ENST00000503847 207 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC3.46□□□□□ -1.86
LMX1BO60663 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 PTGES3P3-201ENST00000511479 482 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC010342.1-201ENST00000514047 877 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 RNU6-1003P-201ENST00000517099 105 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AP003467.2-201ENST00000520175 319 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 AC118273.2-201ENST00000532092 465 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AK6P1-201ENST00000540219 478 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 AL360157.1-201ENST00000565962 87 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC137800.2-201ENST00000574375 120 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC110743.1-201ENST00000584870 478 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 HMGN1P30-201ENST00000589286 268 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 AC123768.4-201ENST00000616244 701 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC3.46□□□□□ -1.86
LMX1BO60663 AL158209.2-201ENST00000619266 216 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC3.46□□□□□ -1.86
LMX1BO60663 AL445264.1-201ENST00000621719 171 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AC068880.5-201ENST00000624331 290 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC3.46□□□□□ -1.86
LMX1BO60663 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 AL133412.1-201ENST00000380194 2992 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 AP002001.2-201ENST00000529025 1469 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
LMX1BO60663 AC106871.1-201ENST00000568324 3102 ntBASIC3.46□□□□□ -1.86
LMX1BO60663 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
LMX1BO60663 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 83.8 ms